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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289824 (63 seq.)
>W1710876932
LMPR01000009
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
1494987
1495062
+
Arg
CCG
[ENA]
¡û
>W1710877139
LMPV01000007
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
87733
87808
+
Arg
CCG
[ENA]
¡û
>W1710909373
LNQL01000001
Bacillota
Exiguobacterium enclense [LNQL]
420380
420305
-
Arg
CCG
[ENA]
¡û
>W1711116982
LUCU01000011
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
404977
404902
-
Arg
CCG
[ENA]
¡û
>W1711166813
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
271710
271635
-
Arg
CCG
[ENA]
¡û
>W131202724
ASXD01000011
Bacillota
Exiguobacterium sp. S17 [ASXD]
7974
8050
+
Arg
CCG
[ENA]
¡û
>W131205103
ATCL01000009
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
44781
44705
-
Arg
CCG
[ENA]
¡û
>W1711256970
LYTG01000028
Bacillota
Exiguobacterium sp. SH31 [LYTG]
51640
51716
+
Arg
CCG
[ENA]
¡û
>W131210482
ATKK01000002
Bacillota
Exiguobacterium sp. 8-11-1 [ATKK]
33023
33099
+
Arg
CCG
[ENA]
¡û
>W1711507278
MKXO01000004
Bacillota
Exiguobacterium aurantiacum [MKXO]
130072
129996
-
Arg
CCG
[ENA]
¡û
>W1711589658
MOEL01000008
Bacillota
Exiguobacterium sp. AT1b [MOEL]
519554
519630
+
Arg
CCG
[ENA]
¡û
>W1711603248
MOLV01000003
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
43923
43848
-
Arg
CCG
[ENA]
¡û
>W1711632652
MPSZ01000003
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
22215
22290
+
Arg
CCG
[ENA]
¡û
>W1711676368
MRSV01000001
Bacillota
Exiguobacterium profundum [MRSV]
1253165
1253089
-
Arg
CCG
[ENA]
¡û
>W1711713113
MTCT01000008
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
1369894
1369970
+
Arg
CCG
[ENA]
¡û
>W1712017293
NESR01000016
Bacillota
Kurthia gibsonii [NESR]
326414
326489
+
Arg
CCG
[ENA]
¡û
>C171040565
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
2949958
2950033
+
Arg
CCG
-
¡û
>C171072147
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
2553039
2553114
+
Arg
CCG
-
¡û
>W131241553
BARY01000004
Bacillota
Exiguobacterium sp. OS-77 [BARY]
247651
247576
-
Arg
CCG
[ENA]
¡û
>W08009407
ABPF01000018
Bacillota
Exiguobacterium sp. AT1b [ABPF]
13489
13565
+
Arg
CCG
[ENA]
¡û
>C08004819
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
2361560
2361635
+
Arg
CCG
[Ensembl]
¡û
>WENV170022945
BCQK01083117
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
56
131
+
Arg
CCG
[ENA]
¢þ
>W141484782
JFYW01000008
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
24389
24464
+
Arg
CCG
[ENA]
¡û
>C191181524
CP040676
Bacillota
Exiguobacterium mexicanum A-EM [CP040676]
736592
736517
-
Arg
CCG
-
¡û
>W141563079
JHZS01000002
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
404435
404360
-
Arg
CCG
[ENA]
¡û
>W141563151
JHZT01000003
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
706194
706118
-
Arg
CCG
[ENA]
¡û
>W141563183
JHZU01000005
Bacillota
Exiguobacterium undae 190-11 [JHZU]
414360
414285
-
Arg
CCG
[ENA]
¡û
>W141563242
JHZV01000004
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
420251
420176
-
Arg
CCG
[ENA]
¡û
>W141620171
JJMW01000025
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
66269
66193
-
Arg
CCG
[ENA]
¡û
>W141620226
JJMW01000071
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
66268
66192
-
Arg
CCG
[ENA]
¡û
>W141701487
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
732619
732694
+
Arg
CCG
[ENA]
¡û
>W141726041
JNAA01000044
Bacillota
Exiguobacterium sp. AB2 [JNAA]
50602
50678
+
Arg
CCG
[ENA]
¡û
>W141730839
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
795192
795116
-
Arg
CCG
[ENA]
¡û
>W141730888
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
1326782
1326706
-
Arg
CCG
[ENA]
¡û
>W141730926
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2058949
2059024
+
Arg
CCG
[ENA]
¡û
>W141730976
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
919940
920015
+
Arg
CCG
[ENA]
¡û
>W141807086
JPOD01000003
Bacillota
Exiguobacterium sp. NG55 [JPOD]
835239
835163
-
Arg
CCG
[ENA]
¡û
>C09106127
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
821641
821717
+
Arg
CCG
[Ensembl]
¡û
>C141009949
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
2451247
2451322
+
Arg
CCG
[Ensembl]
¡û
>W1911770680
QXJB01000004
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
227341
227266
-
Arg
CCG
[ENA]
¡û
>W1810697608
QLVE01000022
Bacillota
Exiguobacterium sp. TNDT2 [QLVE]
44861
44786
-
Arg
CCG
[ENA]
¡û
>W1810760533
QPKF01000001
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
224356
224281
-
Arg
CCG
[ENA]
¡û
>W1810760973
QPKS01000002
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
122189
122114
-
Arg
CCG
[ENA]
¡û
>W1810823271
QSGS01000019
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
19702
19777
+
Arg
CCG
[ENA]
¡û
>W1511325248
JQGI01000001
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
1387934
1388010
+
Arg
CCG
[ENA]
¡û
>W1511403369
JTLB01000012
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
32954
33030
+
Arg
CCG
[ENA]
¡û
>W1511403804
JTLL01000016
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
267003
266928
-
Arg
CCG
[ENA]
¡û
>W1511638512
LDNY01000001
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
719213
719137
-
Arg
CCG
[ENA]
¡û
>W1511686092
LFQN01000029
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
171363
171438
+
Arg
CCG
[ENA]
¡û
>W1511700000
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
1765648
1765723
+
Arg
CCG
[ENA]
¡û
>C131001832
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
2199382
2199457
+
Arg
CCG
[Ensembl]
¡û
>W1610521218
JMEH01000001
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1311487
1311563
+
Arg
CCG
[ENA]
¡û
>W1610589597
LDQV01000014
Bacillota
Exiguobacterium indicum [LDQV]
22097
22172
+
Arg
CCG
[ENA]
¡û
>W1610589683
LDQW01000028
Bacillota
Exiguobacterium indicum [LDQW]
22153
22228
+
Arg
CCG
[ENA]
¡û
>W1610739278
LMPR01000009
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
1494987
1495062
+
Arg
CCG
[ENA]
¡û
>W1610739485
LMPV01000007
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
87733
87808
+
Arg
CCG
[ENA]
¡û
>W1610767732
LNQL01000001
Bacillota
Exiguobacterium enclense [LNQL]
420380
420305
-
Arg
CCG
[ENA]
¡û
>W1610928341
LUCU01000011
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
404977
404902
-
Arg
CCG
[ENA]
¡û
>W1610977353
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
271710
271635
-
Arg
CCG
[ENA]
¡û
>W1710511208
FMYN01000001
Bacillota
Exiguobacterium enclense [FMYN]
420380
420305
-
Arg
CCG
[ENA]
¡û
>W1710619698
JMEH01000001
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1311487
1311563
+
Arg
CCG
[ENA]
¡û
>W1710708877
LDQV01000014
Bacillota
Exiguobacterium indicum [LDQV]
22097
22172
+
Arg
CCG
[ENA]
¡û
>W1710708963
LDQW01000028
Bacillota
Exiguobacterium indicum [LDQW]
22153
22228
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK