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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289825 (118 seq.)
>W1710876927
LMPR01000004
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
74099
74173
+
Val
GAC
[ENA]
¡û
>W1710876928
LMPR01000004
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
84592
84666
+
Val
GAC
[ENA]
¡û
>W1710877140
LMPV01000008
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
74181
74255
+
Val
GAC
[ENA]
¡û
>W1710877141
LMPV01000008
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
84260
84334
+
Val
GAC
[ENA]
¡û
>W1710909408
LNQL01000005
Bacillota
Exiguobacterium enclense [LNQL]
74352
74426
+
Val
GAC
[ENA]
¡û
>W1710909409
LNQL01000005
Bacillota
Exiguobacterium enclense [LNQL]
84850
84924
+
Val
GAC
[ENA]
¡û
>W1711117023
LUCU01000055
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
149504
149430
-
Val
GAC
[ENA]
¡û
>W1711117024
LUCU01000055
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
139016
138942
-
Val
GAC
[ENA]
¡û
>W1711166820
LVVL01000015
Bacillota
Exiguobacterium undae [LVVL]
75461
75535
+
Val
GAC
[ENA]
¡û
>W1711166821
LVVL01000015
Bacillota
Exiguobacterium undae [LVVL]
85975
86049
+
Val
GAC
[ENA]
¡û
>W1711257005
LYTG01000081
Bacillota
Exiguobacterium sp. SH31 [LYTG]
21675
21748
+
Val
GAC
[ENA]
¡û
>W131241575
BARY01000011
Bacillota
Exiguobacterium sp. OS-77 [BARY]
25141
25067
-
Val
GAC
[ENA]
¡û
>W131241576
BARY01000011
Bacillota
Exiguobacterium sp. OS-77 [BARY]
14648
14574
-
Val
GAC
[ENA]
¡û
>W1711507279
MKXO01000005
Bacillota
Exiguobacterium aurantiacum [MKXO]
79775
79848
+
Val
GAC
[ENA]
¡û
>W1711589654
MOEL01000007
Bacillota
Exiguobacterium sp. AT1b [MOEL]
79816
79889
+
Val
GAC
[ENA]
¡û
>W1711603263
MOLV01000024
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
17378
17304
-
Val
GAC
[ENA]
¡û
>W1711603264
MOLV01000024
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
6812
6738
-
Val
GAC
[ENA]
¡û
>W1711632664
MPSZ01000005
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
120604
120530
-
Val
GAC
[ENA]
¡û
>W1711632665
MPSZ01000005
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
110111
110037
-
Val
GAC
[ENA]
¡û
>W1711676360
MRSV01000001
Bacillota
Exiguobacterium profundum [MRSV]
2750848
2750775
-
Val
GAC
[ENA]
¡û
>W1711713095
MTCT01000006
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
190058
190131
+
Val
GAC
[ENA]
¡û
>W1712017310
NESR01000022
Bacillota
Kurthia gibsonii [NESR]
74594
74668
+
Val
GAC
[ENA]
¡û
>W1712017311
NESR01000022
Bacillota
Kurthia gibsonii [NESR]
85081
85155
+
Val
GAC
[ENA]
¡û
>C171040546
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1005426
1005500
+
Val
GAC
-
¡û
>C171040547
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1017205
1017279
+
Val
GAC
-
¡û
>C171072127
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
569281
569355
+
Val
GAC
-
¡û
>C171072128
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
579357
579431
+
Val
GAC
-
¡û
>W131202734
ASXD01000029
Bacillota
Exiguobacterium sp. S17 [ASXD]
10264
10191
-
Val
GAC
[ENA]
¡û
>W131205092
ATCL01000003
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
79181
79254
+
Val
GAC
[ENA]
¡û
>W131210485
ATKK01000006
Bacillota
Exiguobacterium sp. 8-11-1 [ATKK]
95519
95446
-
Val
GAC
[ENA]
¡û
>w003649
AADW02000004
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
140815
140738
-
Val
GAC
[ENA]
¡û
>w003648
AADW02000004
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
151318
151241
-
Val
GAC
[ENA]
¡û
>W08009404
ABPF01000008
Bacillota
Exiguobacterium sp. AT1b [ABPF]
54612
54685
+
Val
GAC
[ENA]
¡û
>C08004800
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
548733
548807
+
Val
GAC
[Ensembl]
¡û
>C08004801
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
559236
559310
+
Val
GAC
[Ensembl]
¡û
>WENV170022325
BCQK01005362
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1351
1425
+
Val
GAC
[ENA]
¢þ
>WENV170022528
BCQK01018434
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
292
366
+
Val
GAC
[ENA]
¢þ
>W141484802
JFYW01000011
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
74334
74408
+
Val
GAC
[ENA]
¡û
>W141484803
JFYW01000011
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
84411
84485
+
Val
GAC
[ENA]
¡û
>C181047170
CP020874
Bacillota
Bacillus velezensis GYL4 [CP020874]
934894
934820
-
Val
GAC
-
¡û
>C181070216
CP022654
Bacillota
Bacillus velezensis SCDB 291 [CP022654]
1060763
1060689
-
Val
GAC
-
¡û
>C181088486
CP023666
Bacillota
Bacillus paralicheniformis Bac48 [CP023666]
963248
963322
+
Val
GAC
-
¡û
>C191064336
CP029473
Bacillota
Bacillus velezensis Hx05 [CP029473]
793256
793182
-
Val
GAC
-
¡û
>C191085356
CP032154
Bacillota
Bacillus velezensis ZF2 [CP032154]
1149052
1149126
+
Val
GAC
-
¡û
>C191095793
CP032852
Bacillota
Bacillus subtilis subsp. subtilis GFR-12 [CP032852]
2009664
2009738
+
Val
GAC
-
¡û
>C191096253
CP032861
Bacillota
Bacillus subtilis subsp. subtilis N1-1 [CP032861]
1276662
1276588
-
Val
GAC
-
¡û
>C191098847
CP033044
Bacillota
Mesobacillus foraminis Bac44 [CP033044]
468114
468042
-
Val
GAC
-
¡û
>C191126694
CP034484
Bacillota
Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 [CP034484]
1262388
1262462
+
Val
GAC
-
¡û
>C191135963
CP035163
Bacillota
Bacillus subtilis SRCM103923 [CP035163]
1221051
1221125
+
Val
GAC
-
¡û
>C191181508
CP040676
Bacillota
Exiguobacterium mexicanum A-EM [CP040676]
2206907
2206834
-
Val
GAC
-
¡û
>W141563061
JHZS01000002
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
2243259
2243185
-
Val
GAC
[ENA]
¡û
>W141563062
JHZS01000002
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
2232746
2232672
-
Val
GAC
[ENA]
¡û
>W141563135
JHZT01000003
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
2175793
2175720
-
Val
GAC
[ENA]
¡û
>W141563194
JHZU01000006
Bacillota
Exiguobacterium undae 190-11 [JHZU]
1151460
1151386
-
Val
GAC
[ENA]
¡û
>W141563195
JHZU01000006
Bacillota
Exiguobacterium undae 190-11 [JHZU]
1140937
1140863
-
Val
GAC
[ENA]
¡û
>W141563266
JHZV01000006
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
146989
146915
-
Val
GAC
[ENA]
¡û
>W141563267
JHZV01000006
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
136475
136401
-
Val
GAC
[ENA]
¡û
>W141620165
JJMW01000008
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
83049
83122
+
Val
GAC
[ENA]
¡û
>W141701536
JMKS01000005
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
86074
86148
+
Val
GAC
[ENA]
¡û
>W141701537
JMKS01000005
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
96374
96448
+
Val
GAC
[ENA]
¡û
>W141726042
JNAA01000046
Bacillota
Exiguobacterium sp. AB2 [JNAA]
16540
16467
-
Val
GAC
[ENA]
¡û
>W141730823
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
2349294
2349221
-
Val
GAC
[ENA]
¡û
>W141730872
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
2842373
2842300
-
Val
GAC
[ENA]
¡û
>W141730907
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
128558
128632
+
Val
GAC
[ENA]
¡û
>W141730908
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
139042
139116
+
Val
GAC
[ENA]
¡û
>W141731009
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2130536
2130610
+
Val
GAC
[ENA]
¡û
>W141731010
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2137641
2137715
+
Val
GAC
[ENA]
¡û
>W141807040
JPOD01000001
Bacillota
Exiguobacterium sp. NG55 [JPOD]
91892
91965
+
Val
GAC
[ENA]
¡û
>C141009930
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
522650
522724
+
Val
GAC
[Ensembl]
¡û
>C141009931
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
533148
533222
+
Val
GAC
[Ensembl]
¡û
>W1910802483
MSYT01000009
Bacillota
Bacillus amyloliquefaciens Fito_F321 [MSYT]
86071
86145
+
Val
GAC
[ENA]
¡û
>W1910888235
NERK01000007
Bacillota
Bacillus halotolerans RSCu-8D [NERK]
314258
314332
+
Val
GAC
[ENA]
¡û
>W1911071479
NMQS01000008
Bacillota
Bacillus safensis Ingolstadt [NMQS]
286962
287034
+
Val
GAC
[ENA]
¡û
>C09106146
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
2249805
2249878
+
Val
GAC
[Ensembl]
¡û
>W1911145842
NPCS01000001
Bacillota
Bacillus sonorensis 7710 [NPCS]
349220
349294
+
Val
GAC
[ENA]
¡û
>W1911770681
QXJB01000005
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
75164
75238
+
Val
GAC
[ENA]
¡û
>W1911770682
QXJB01000005
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
85687
85761
+
Val
GAC
[ENA]
¡û
>W1810697609
QLVE01000029
Bacillota
Exiguobacterium sp. TNDT2 [QLVE]
19846
19919
+
Val
GAC
[ENA]
¡û
>W1810760545
QPKF01000003
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
146957
146883
-
Val
GAC
[ENA]
¡û
>W1810760546
QPKF01000003
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
136451
136377
-
Val
GAC
[ENA]
¡û
>W1810760984
QPKS01000004
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
76060
76134
+
Val
GAC
[ENA]
¡û
>W1810760985
QPKS01000004
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
87459
87533
+
Val
GAC
[ENA]
¡û
>W1810823269
QSGS01000016
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
21512
21439
-
Val
GAC
[ENA]
¡û
>W1510741432
CYHJ01000020
Bacillota
Bacillus subtilis [CYHJ]
2256
2182
-
Val
GAC
[ENA]
¡û
>W1511325272
JQGI01000003
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
132485
132412
-
Val
GAC
[ENA]
¡û
>W1511402848
JTKJ01000043
Bacillota
Bacillus velezensis KACC 13105 [JTKJ]
84143
84217
+
Val
GAC
[ENA]
¡û
>W1511403372
JTLB01000022
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
60505
60432
-
Val
GAC
[ENA]
¡û
>W1511403808
JTLL01000025
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
74305
74379
+
Val
GAC
[ENA]
¡û
>W1511638527
LDNY01000003
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
125807
125734
-
Val
GAC
[ENA]
¡û
>W1511643813
LDWT01000004
Bacillota
Bacillus safensis LK32 [LDWT]
236493
236565
+
Val
GAC
[ENA]
¡û
>W1511643870
LDWU01000002
Bacillota
Bacillus stratosphericus LK33 [LDWU]
142097
142025
-
Val
GAC
[ENA]
¡û
>W1511686085
LFQN01000020
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
34193
34267
+
Val
GAC
[ENA]
¡û
>W1511686086
LFQN01000020
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
44671
44745
+
Val
GAC
[ENA]
¡û
>W1511699976
LGIW01000013
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
148930
148856
-
Val
GAC
[ENA]
¡û
>W1511699977
LGIW01000013
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
138447
138373
-
Val
GAC
[ENA]
¡û
>C131001814
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
508469
508543
+
Val
GAC
[Ensembl]
¡û
>W1610521247
JMEH01000010
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
79624
79697
+
Val
GAC
[ENA]
¡û
>W1610589608
LDQV01000028
Bacillota
Exiguobacterium indicum [LDQV]
24996
24922
-
Val
GAC
[ENA]
¡û
>W1610589609
LDQV01000028
Bacillota
Exiguobacterium indicum [LDQV]
14503
14429
-
Val
GAC
[ENA]
¡û
>W1610589668
LDQW01000009
Bacillota
Exiguobacterium indicum [LDQW]
11635
11709
+
Val
GAC
[ENA]
¡û
>W1610589669
LDQW01000009
Bacillota
Exiguobacterium indicum [LDQW]
22128
22202
+
Val
GAC
[ENA]
¡û
>W1610739273
LMPR01000004
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
74099
74173
+
Val
GAC
[ENA]
¡û
>W1610739274
LMPR01000004
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
84592
84666
+
Val
GAC
[ENA]
¡û
>W1610739486
LMPV01000008
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
74181
74255
+
Val
GAC
[ENA]
¡û
>W1610739487
LMPV01000008
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
84260
84334
+
Val
GAC
[ENA]
¡û
>W1610767767
LNQL01000005
Bacillota
Exiguobacterium enclense [LNQL]
74352
74426
+
Val
GAC
[ENA]
¡û
>W1610767768
LNQL01000005
Bacillota
Exiguobacterium enclense [LNQL]
84850
84924
+
Val
GAC
[ENA]
¡û
>W1610928382
LUCU01000055
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
149504
149430
-
Val
GAC
[ENA]
¡û
>W1610928383
LUCU01000055
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
139016
138942
-
Val
GAC
[ENA]
¡û
>W1610977360
LVVL01000015
Bacillota
Exiguobacterium undae [LVVL]
75461
75535
+
Val
GAC
[ENA]
¡û
>W1610977361
LVVL01000015
Bacillota
Exiguobacterium undae [LVVL]
85975
86049
+
Val
GAC
[ENA]
¡û
>W1710511243
FMYN01000005
Bacillota
Exiguobacterium enclense [FMYN]
74352
74426
+
Val
GAC
[ENA]
¡û
>W1710511244
FMYN01000005
Bacillota
Exiguobacterium enclense [FMYN]
84850
84924
+
Val
GAC
[ENA]
¡û
>W1710619727
JMEH01000010
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
79624
79697
+
Val
GAC
[ENA]
¡û
>W1710708888
LDQV01000028
Bacillota
Exiguobacterium indicum [LDQV]
24996
24922
-
Val
GAC
[ENA]
¡û
>W1710708889
LDQV01000028
Bacillota
Exiguobacterium indicum [LDQV]
14503
14429
-
Val
GAC
[ENA]
¡û
>W1710708948
LDQW01000009
Bacillota
Exiguobacterium indicum [LDQW]
11635
11709
+
Val
GAC
[ENA]
¡û
>W1710708949
LDQW01000009
Bacillota
Exiguobacterium indicum [LDQW]
22128
22202
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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