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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290044 (26 seq.)
>W131163789
ARAA01000066
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
19871
19796
-
Lys
CTT
[ENA]
¡û
>w026506
ABAY01000418
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
1234
1162
-
Lys
CTT
[ENA]
¡û
>WENV180032011
FTJU01006900
[FTJU] metagenome; soil
718
793
+
Lys
CTT
[ENA]
¢þ
>WENV181166575
OEIU01000663
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
14516
14591
+
Lys
CTT
[ENA]
¢þ
>WENV181166821
OEIU01002710
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3569
3494
-
Lys
CTT
[ENA]
¢þ
>WENV181167707
OEIU01061763
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5
80
+
Lys
CTT
[ENA]
¢þ
>WENV181234505
OFEU01000228
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
32178
32253
+
Lys
CTT
[ENA]
¢þ
>W08006134
ABIP01000005
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
227092
227167
+
Lys
CTT
[ENA]
¡û
>C08000312
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
4079261
4079336
+
Lys
CTT
[Ensembl]
¡û
>C08006416
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
1587890
1587965
+
Lys
CTT
[Ensembl]
¡û
>WENV170680718
LFEF01014120
[LFEF] freshwater metagenome; waterbloom
490
565
+
Lys
CTT
[ENA]
¢þ
>C181041852
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
2251392
2251467
+
Lys
CTT
-
¡û
>C181180175
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
480061
480136
+
Lys
CTT
-
¡û
>C181180176
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
480261
480336
+
Lys
CTT
-
¡û
>C09107877
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
1021170
1021095
-
Lys
CTT
[Ensembl]
¡û
>W1911653528
QDFX01000012
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
42333
42408
+
Lys
CTT
[ENA]
¡û
>W1911708561
QOWC01000049
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
43408
43483
+
Lys
CTT
[ENA]
¡û
>W1810062041
PDNU01000003
Alphaproteobacteria
Pseudoroseomonas rhizosphaerae YW11 [PDNU]
251383
251458
+
Lys
CTT
[ENA]
¡û
>W1510741106
CYHC01000001
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
171479
171404
-
Lys
CTT
[ENA]
¡û
>W1511400917
JTHF01000321
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
188
113
-
Lys
CTT
[ENA]
¡û
>W1511625947
LCZM01000212
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
389
464
+
Lys
CTT
[ENA]
¡û
>W1610040681
BALE01000052
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
29811
29736
-
Lys
CTT
[ENA]
¡û
>W1710037879
BALE01000052
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
29811
29736
-
Lys
CTT
[ENA]
¡û
>W1710516652
FNCS01000003
Alphaproteobacteria
Pelagibacterium luteolum [FNCS]
51278
51203
-
Lys
CTT
[ENA]
¡û
>W1710579027
FPCB01000004
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
260161
260086
-
Lys
CTT
[ENA]
¡û
>W1710579028
FPCB01000004
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
259980
259905
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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