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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290045 (64 seq.)
>W1711090566
LTAV01000007
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
57272
57197
-
Thr
GGT
[ENA]
¡û
>W1711090676
LTAW01000012
Gammaproteobacteria
Marinomonas atlantica [LTAW]
6657
6732
+
Thr
GGT
[ENA]
¡û
>W1711090747
LTAX01000028
Gammaproteobacteria
Marinomonas gallaica [LTAX]
30698
30623
-
Thr
GGT
[ENA]
¡û
>W131230676
AUHU01000020
Gammaproteobacteria
Marinimicrobium agarilyticum DSM 16975 [AUHU]
1448
1373
-
Thr
GGT
[ENA]
¡û
>W1711361358
MDLC01000094
Gammaproteobacteria
Candidatus Endobugula sertula [MDLC]
342
267
-
Thr
GGT
[ENA]
¡û
>W1712081304
NHNK01000015
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
60319
60244
-
Thr
GGT
[ENA]
¡û
>C013009
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4856064
4855989
-
Thr
GGT
[Ensembl]
¡û
>w013344
AANE01000026
Gammaproteobacteria
Marinomonas sp. MED121 [AANE]
17435
17510
+
Thr
GGT
[ENA]
¡û
>WENV180042127
LNFX01000161
[LNFX] marine sediment metagenome; antarctic beach sand mud
11243
11318
+
Thr
GGT
[ENA]
¢þ
>WENV181322413
OFKR01004570
[OFKR] marine metagenome; sea ice
22
97
+
Thr
GGT
[ENA]
¢þ
>W141135603
AWEP01000009
Gammaproteobacteria
Marinimicrobium sp. LS-A18 [AWEP]
8756
8831
+
Thr
GGT
[ENA]
¡û
>W141191401
AYOZ01000010
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
57385
57310
-
Thr
GGT
[ENA]
¡û
>W141284696
JAMB01000012
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
23666
23741
+
Thr
GGT
[ENA]
¡û
>C08003214
CP000934
Gammaproteobacteria
Cellvibrio japonicus Ueda107 [CP000934]
816693
816768
+
Thr
GGT
[Ensembl]
¡û
>WENV183616860
OOEE01004593
[OOEE] marine metagenome; sea ice
320
245
-
Thr
GGT
[ENA]
¢þ
>WENV183617521
OOEG01004036
[OOEG] marine metagenome; sea ice
320
245
-
Thr
GGT
[ENA]
¢þ
>WENV183621465
OOFU01001799
[OOFU] marine metagenome; sea ice
1062
1137
+
Thr
GGT
[ENA]
¢þ
>WENV183624695
OOGE01001090
[OOGE] marine metagenome; sea ice
2328
2403
+
Thr
GGT
[ENA]
¢þ
>WENV183628129
OOGM01021754
[OOGM] marine metagenome; sea ice
403
478
+
Thr
GGT
[ENA]
¢þ
>WENV183630795
OOGU01002553
[OOGU] marine metagenome; sea ice
2186
2111
-
Thr
GGT
[ENA]
¢þ
>WENV170214299
CEPX01076268
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1467
1392
-
Thr
GGT
[ENA]
¢þ
>WENV170780927
MAAB01028417
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
334
409
+
Thr
GGT
[ENA]
¢þ
>W09106480
AAVH01000032
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
2338
2413
+
Thr
GGT
[ENA]
¡û
>C191039808
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3751261
3751186
-
Thr
GGT
-
¡û
>W141557232
JHUZ01000008
Gammaproteobacteria
Balneatrix alpica DSM 16621 [JHUZ]
563186
563111
-
Thr
GGT
[ENA]
¡û
>W141557258
JHUZ01000011
Gammaproteobacteria
Balneatrix alpica DSM 16621 [JHUZ]
522975
522900
-
Thr
GGT
[ENA]
¡û
>W1910584847
JYBL01000026
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
20669
20744
+
Thr
GGT
[ENA]
¡û
>W1910597304
LAPT01000003
Gammaproteobacteria
Pokkaliibacter plantistimulans L1E11 [LAPT]
23464
23539
+
Thr
GGT
[ENA]
¡û
>W1910597369
LAPT01000145
Gammaproteobacteria
Pokkaliibacter plantistimulans L1E11 [LAPT]
29
104
+
Thr
GGT
[ENA]
¡û
>W1910914901
NHTT01000018
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
57538
57463
-
Thr
GGT
[ENA]
¡û
>W1810272020
PRLP01000037
Gammaproteobacteria
Pokkaliibacter plantistimulans 228 [PRLP]
47393
47318
-
Thr
GGT
[ENA]
¡û
>W1810272024
PRLP01000054
Gammaproteobacteria
Pokkaliibacter plantistimulans 228 [PRLP]
60042
59967
-
Thr
GGT
[ENA]
¡û
>W1810606252
QGOK01000024
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
19079
19154
+
Thr
GGT
[ENA]
¡û
>W1810625273
QHJF01000032
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
13262
13337
+
Thr
GGT
[ENA]
¡û
>W1810676285
QKLW01000013
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
11474
11549
+
Thr
GGT
[ENA]
¡û
>W1810679680
QKRA01000012
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
60331
60256
-
Thr
GGT
[ENA]
¡û
>W1810720361
QNRF01000011
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
62932
62857
-
Thr
GGT
[ENA]
¡û
>W1810721722
QNSE01000017
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
11605
11680
+
Thr
GGT
[ENA]
¡û
>W1810759724
QPJQ01000025
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
57342
57267
-
Thr
GGT
[ENA]
¡û
>W1810885381
QUNG01000016
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
8017
8092
+
Thr
GGT
[ENA]
¡û
>C11114638
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
234468
234543
+
Thr
GGT
[Ensembl]
¡û
>C11115032
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
3700450
3700375
-
Thr
GGT
[Ensembl]
¡û
>W1510741321
CYHG01000004
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
300066
300141
+
Thr
GGT
[ENA]
¡û
>W1511518544
JXYC01000041
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
69977
69902
-
Thr
GGT
[ENA]
¡û
>W11150190
AEVK01000059
Gammaproteobacteria
gamma proteobacterium IMCC1989 [AEVK]
331
256
-
Thr
GGT
[ENA]
¡û
>W1610503741
FLOB01000016
Gammaproteobacteria
Marinomonas spartinae [FLOB]
71384
71309
-
Thr
GGT
[ENA]
¡û
>W1610503778
FLOC01000006
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
124009
124084
+
Thr
GGT
[ENA]
¡û
>W1610504005
FLOE01000007
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
10561
10636
+
Thr
GGT
[ENA]
¡û
>W1610506648
FLRA01000019
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
6480
6555
+
Thr
GGT
[ENA]
¡û
>W1610506715
FLRB01000003
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
6480
6555
+
Thr
GGT
[ENA]
¡û
>W1610540071
JSEE01000019
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
60303
60228
-
Thr
GGT
[ENA]
¡û
>W1610540160
JSEN01000018
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
15054
15129
+
Thr
GGT
[ENA]
¡û
>W1610540257
JSEO01000019
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
15054
15129
+
Thr
GGT
[ENA]
¡û
>W1610632886
LIQF01000004
Gammaproteobacteria
Marinomonas fungiae [LIQF]
300066
300141
+
Thr
GGT
[ENA]
¡û
>W1610924806
LTAV01000007
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
57272
57197
-
Thr
GGT
[ENA]
¡û
>W1610924916
LTAW01000012
Gammaproteobacteria
Marinomonas atlantica [LTAW]
6657
6732
+
Thr
GGT
[ENA]
¡û
>W1610924987
LTAX01000028
Gammaproteobacteria
Marinomonas gallaica [LTAX]
30698
30623
-
Thr
GGT
[ENA]
¡û
>W1710496570
FLOB01000016
Gammaproteobacteria
Marinomonas spartinae [FLOB]
71384
71309
-
Thr
GGT
[ENA]
¡û
>W1710496607
FLOC01000006
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
124009
124084
+
Thr
GGT
[ENA]
¡û
>W1710583994
FQVF01000025
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
57660
57585
-
Thr
GGT
[ENA]
¡û
>W1710643092
JSEE01000019
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
60303
60228
-
Thr
GGT
[ENA]
¡û
>W1710643181
JSEN01000018
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
15054
15129
+
Thr
GGT
[ENA]
¡û
>W1710643278
JSEO01000019
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
15054
15129
+
Thr
GGT
[ENA]
¡û
>W1710767318
LIQF01000004
Gammaproteobacteria
Marinomonas fungiae [LIQF]
300066
300141
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK