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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290068 (97 seq.)
>W1711333324
MBPP01000006
Gammaproteobacteria
Marinobacter sp. AC-23 [MBPP]
138615
138690
+
Lys
TTT
[ENA]
¡û
>W1711333325
MBPP01000006
Gammaproteobacteria
Marinobacter sp. AC-23 [MBPP]
138763
138838
+
Lys
TTT
[ENA]
¡û
>W1711388956
MEIY01000001
Gammaproteobacteria
Marinobacter sp. X15-166B [MEIY]
2741100
2741175
+
Lys
TTT
[ENA]
¡û
>W1711388957
MEIY01000001
Gammaproteobacteria
Marinobacter sp. X15-166B [MEIY]
2741259
2741334
+
Lys
TTT
[ENA]
¡û
>C171118708
CP021425
Gammaproteobacteria
Oleiphilus messinensis ME102 [CP021425]
2869910
2869985
+
Lys
TTT
-
¡û
>C171118709
CP021425
Gammaproteobacteria
Oleiphilus messinensis ME102 [CP021425]
2870308
2870383
+
Lys
TTT
-
¡û
>W131111410
APLQ01000014
Gammaproteobacteria
Marinobacter nanhaiticus D15-8W [APLQ]
2112035
2111960
-
Lys
TTT
[ENA]
¡û
>W131111411
APLQ01000014
Gammaproteobacteria
Marinobacter nanhaiticus D15-8W [APLQ]
2111901
2111826
-
Lys
TTT
[ENA]
¡û
>W131166729
ARCR01000038
Gammaproteobacteria
Marinobacter gelidimuriae BF04_CF-4 [ARCR]
18847
18772
-
Lys
TTT
[ENA]
¡û
>W131166730
ARCR01000038
Gammaproteobacteria
Marinobacter gelidimuriae BF04_CF-4 [ARCR]
18611
18536
-
Lys
TTT
[ENA]
¡û
>C010437
CP000155
Gammaproteobacteria
Hahella chejuensis KCTC 2396 [CP000155]
5047428
5047353
-
Lys
TTT
[Ensembl]
¡û
>C010438
CP000155
Gammaproteobacteria
Hahella chejuensis KCTC 2396 [CP000155]
5047300
5047225
-
Lys
TTT
[Ensembl]
¡û
>C012945
CP000514
Gammaproteobacteria
Marinobacter nauticus VT8 [CP000514]
1387007
1387082
+
Lys
TTT
[Ensembl]
¡û
>w023561
AAXY01000028
Gammaproteobacteria
Marinobacter sp. ELB17 [AAXY]
1599
1527
-
Lys
TTT
[ENA]
¡û
>w023560
AAXY01000028
Gammaproteobacteria
Marinobacter sp. ELB17 [AAXY]
1837
1765
-
Lys
TTT
[ENA]
¡û
>WENV180294331
OBIY01079721
[OBIY] beach sand metagenome; beach sand
279
354
+
Lys
TTT
[ENA]
¢þ
>WENV180296149
OBJA01000018
[OBJA] soil metagenome; sediment, water from around vicinity
43617
43542
-
Lys
TTT
[ENA]
¢þ
>WENV181122659
OEFM01091974
[OEFM] marine metagenome; ENVO:00000569 for seawater
103
28
-
Lys
TTT
[ENA]
¢þ
>WENV181173391
OEIV011434054
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
54
129
+
Lys
TTT
[ENA]
¢þ
>WENV182546977
OJBR01000041
[OJBR] seawater metagenome; Sea water
34089
34014
-
Lys
TTT
[ENA]
¢þ
>WENV182547029
OJBR01000199
[OJBR] seawater metagenome; Sea water
2421
2496
+
Lys
TTT
[ENA]
¢þ
>WENV182547181
OJBR01005721
[OJBR] seawater metagenome; Sea water
600
525
-
Lys
TTT
[ENA]
¢þ
>WENV182547884
OJBU01001070
[OJBU] seawater metagenome; Sea water
4837
4912
+
Lys
TTT
[ENA]
¢þ
>WENV182592835
OJIS01000014
[OJIS] seawater metagenome; Sea water
18927
19002
+
Lys
TTT
[ENA]
¢þ
>WENV182592836
OJIS01000014
[OJIS] seawater metagenome; Sea water
19071
19146
+
Lys
TTT
[ENA]
¢þ
>WENV182592843
OJIS01000035
[OJIS] seawater metagenome; Sea water
15355
15430
+
Lys
TTT
[ENA]
¢þ
>WENV183616082
OOEC01053328
[OOEC] marine metagenome; sea ice
38
113
+
Lys
TTT
[ENA]
¢þ
>WENV183704071
PDWI01000018
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
11007
10932
-
Lys
TTT
[ENA]
¢þ
>WENV183704072
PDWI01000018
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10871
10796
-
Lys
TTT
[ENA]
¢þ
>WENV183704773
PDWI01000623
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
39418
39343
-
Lys
TTT
[ENA]
¢þ
>WENV183716513
PDWJ01000032
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
11007
10932
-
Lys
TTT
[ENA]
¢þ
>WENV183716514
PDWJ01000032
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
10871
10796
-
Lys
TTT
[ENA]
¢þ
>WENV183717654
PDWJ01001333
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
17804
17879
+
Lys
TTT
[ENA]
¢þ
>WENV183749813
PPFU01215790
[PPFU] hypolithon metagenome; Antarctic Hypolithon
189
114
-
Lys
TTT
[ENA]
¢þ
>WENV170015557
AZIH01004921
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
1555
1480
-
Lys
TTT
[ENA]
¢þ
>WENV170016409
AZIK01003484
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
52298
52373
+
Lys
TTT
[ENA]
¢þ
>WENV170016437
AZIK01005084
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
3603
3528
-
Lys
TTT
[ENA]
¢þ
>WENV170016438
AZIK01005084
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
3459
3384
-
Lys
TTT
[ENA]
¢þ
>WENV170016485
AZIK01009156
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
26585
26660
+
Lys
TTT
[ENA]
¢þ
>WENV170016486
AZIK01009156
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
26756
26831
+
Lys
TTT
[ENA]
¢þ
>WENV170136194
CENV01010722
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9561
9636
+
Lys
TTT
[ENA]
¢þ
>WENV170192539
CEPF01016332
[CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
492
567
+
Lys
TTT
[ENA]
¢þ
>WENV170335779
CESZ01098210
[CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
359
284
-
Lys
TTT
[ENA]
¢þ
>WENV170674092
LAZR01043591
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
75
1
-
Lys
TTT
[ENA]
¢þ
>C191132290
CP034836
Gammaproteobacteria
Hahella sp. KA22 [CP034836]
1850328
1850403
+
Lys
TTT
-
¡û
>C191132291
CP034836
Gammaproteobacteria
Hahella sp. KA22 [CP034836]
1850456
1850531
+
Lys
TTT
-
¡û
>C191143752
CP035490
Gammaproteobacteria
Hahella sp. KA22 [CP035490]
2422240
2422315
+
Lys
TTT
-
¡û
>C191143753
CP035490
Gammaproteobacteria
Hahella sp. KA22 [CP035490]
2422368
2422443
+
Lys
TTT
-
¡û
>C191155301
CP037934
Gammaproteobacteria
Marinobacter sp. JH2 [CP037934]
1512635
1512560
-
Lys
TTT
-
¡û
>C191155302
CP037934
Gammaproteobacteria
Marinobacter sp. JH2 [CP037934]
1512499
1512424
-
Lys
TTT
-
¡û
>W09104004
AALG01000033
Gammaproteobacteria
Marinobacter nauticus VT8 [AALG]
22092
22167
+
Lys
TTT
[ENA]
¡û
>W141776816
JOMH01000001
Gammaproteobacteria
Polycyclovorans algicola TG408 [JOMH]
2528519
2528444
-
Lys
TTT
[ENA]
¡û
>W1910821882
MWIN01000004
Gammaproteobacteria
Panacagrimonas perspica DSM 26377 [MWIN]
154981
154906
-
Lys
TTT
[ENA]
¡û
>W1910923684
NIHC01000004
Gammaproteobacteria
Marinobacter salexigens HJR7 [NIHC]
440633
440708
+
Lys
TTT
[ENA]
¡û
>W1910923685
NIHC01000004
Gammaproteobacteria
Marinobacter salexigens HJR7 [NIHC]
440780
440855
+
Lys
TTT
[ENA]
¡û
>W1910923727
NIHD01000003
Gammaproteobacteria
Marinobacter aromaticivorans D15-8P [NIHD]
437781
437856
+
Lys
TTT
[ENA]
¡û
>W1910923728
NIHD01000003
Gammaproteobacteria
Marinobacter aromaticivorans D15-8P [NIHD]
437929
438004
+
Lys
TTT
[ENA]
¡û
>W1911424807
NXGV01000001
Gammaproteobacteria
Marinobacter sp. ANT_B65 [NXGV]
1335580
1335655
+
Lys
TTT
[ENA]
¡û
>W1911424808
NXGV01000001
Gammaproteobacteria
Marinobacter sp. ANT_B65 [NXGV]
1335728
1335803
+
Lys
TTT
[ENA]
¡û
>W1810057906
PDJA01000001
Gammaproteobacteria
Marinobacter sp. LV10MA510-1 [PDJA]
1398569
1398494
-
Lys
TTT
[ENA]
¡û
>W1810057907
PDJA01000001
Gammaproteobacteria
Marinobacter sp. LV10MA510-1 [PDJA]
1398331
1398256
-
Lys
TTT
[ENA]
¡û
>W1810058544
PDJM01000001
Gammaproteobacteria
Marinobacter sp. LV10R520-4 [PDJM]
4257816
4257741
-
Lys
TTT
[ENA]
¡û
>W1810058545
PDJM01000001
Gammaproteobacteria
Marinobacter sp. LV10R520-4 [PDJM]
4257578
4257503
-
Lys
TTT
[ENA]
¡û
>W1810173507
PJNC01000001
Gammaproteobacteria
Marinobacter sp. LV10R510-8 [PJNC]
2853007
2853082
+
Lys
TTT
[ENA]
¡û
>W1810595478
QGEH01000001
Gammaproteobacteria
Marinobacter bohaiensis T17 [QGEH]
1897388
1897463
+
Lys
TTT
[ENA]
¡û
>W1810595479
QGEH01000001
Gammaproteobacteria
Marinobacter bohaiensis T17 [QGEH]
1897518
1897593
+
Lys
TTT
[ENA]
¡û
>W1810700706
QMDL01000001
Gammaproteobacteria
Marinobacter litoralis Sw-45 [QMDL]
828670
828745
+
Lys
TTT
[ENA]
¡û
>W1810700707
QMDL01000001
Gammaproteobacteria
Marinobacter litoralis Sw-45 [QMDL]
828806
828881
+
Lys
TTT
[ENA]
¡û
>W1810725114
QOCH01000013
Gammaproteobacteria
Marinobacter sp. F3R11 [QOCH]
107516
107441
-
Lys
TTT
[ENA]
¡û
>W1810725115
QOCH01000013
Gammaproteobacteria
Marinobacter sp. F3R11 [QOCH]
107369
107294
-
Lys
TTT
[ENA]
¡û
>C151083245
CP011494
Gammaproteobacteria
Marinobacter psychrophilus 20041 [CP011494]
2426460
2426385
-
Lys
TTT
[Ensembl]
¡û
>C151083246
CP011494
Gammaproteobacteria
Marinobacter psychrophilus 20041 [CP011494]
2426220
2426145
-
Lys
TTT
[Ensembl]
¡û
>W1511564148
LADM01000041
Gammaproteobacteria
Gammaproteobacteria bacterium BRH_c0 [LADM]
50350
50425
+
Lys
TTT
[ENA]
¡û
>C121016548
FP929140
Gammaproteobacteria
gamma proteobacterium HdN1 [FP929140]
4007718
4007793
+
Lys
TTT
[Ensembl]
¡û
>W1610019368
ARXU01000010
Gammaproteobacteria
Alcanivorax jadensis T9 [ARXU]
11652
11577
-
Lys
TTT
[ENA]
¡û
>C131005694
CP003735
Gammaproteobacteria
Marinobacter sp. BSs20148 [CP003735]
2446723
2446648
-
Lys
TTT
[Ensembl]
¡û
>C131005695
CP003735
Gammaproteobacteria
Marinobacter sp. BSs20148 [CP003735]
2446483
2446408
-
Lys
TTT
[Ensembl]
¡û
>W1610851405
LQBR01000002
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
259163
259088
-
Lys
TTT
[ENA]
¡û
>W1610851406
LQBR01000002
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
258967
258892
-
Lys
TTT
[ENA]
¡û
>W1610875189
LRDC01000015
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
71398
71473
+
Lys
TTT
[ENA]
¡û
>W1610875190
LRDC01000015
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
71560
71635
+
Lys
TTT
[ENA]
¡û
>W1610875191
LRDC01000015
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
71804
71879
+
Lys
TTT
[ENA]
¡û
>W1610875192
LRDC01000015
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
72086
72161
+
Lys
TTT
[ENA]
¡û
>W1610875220
LRDC01000065
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
16
91
+
Lys
TTT
[ENA]
¡û
>W1610875221
LRDC01000065
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
261
336
+
Lys
TTT
[ENA]
¡û
>W1610875222
LRDC01000065
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
543
618
+
Lys
TTT
[ENA]
¡û
>W1610875227
LRDC01000080
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
16
91
+
Lys
TTT
[ENA]
¡û
>W1610875228
LRDC01000080
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
261
336
+
Lys
TTT
[ENA]
¡û
>W1610985539
LWFX01000322
Gammaproteobacteria
Alcanivorax sp. HI0083 [LWFX]
651
726
+
Lys
TTT
[ENA]
¡û
>W1610985540
LWFX01000331
Gammaproteobacteria
Alcanivorax sp. HI0083 [LWFX]
4988
4913
-
Lys
TTT
[ENA]
¡û
>W1610985863
LWGC01001113
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
494
419
-
Lys
TTT
[ENA]
¡û
>W1610985864
LWGC01001113
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
334
259
-
Lys
TTT
[ENA]
¡û
>W1610985874
LWGC01001308
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
54347
54422
+
Lys
TTT
[ENA]
¡û
>W1610985875
LWGC01001308
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
54507
54582
+
Lys
TTT
[ENA]
¡û
>W1710016262
ARXU01000010
Gammaproteobacteria
Alcanivorax jadensis T9 [ARXU]
11652
11577
-
Lys
TTT
[ENA]
¡û
>W1710589997
FRAQ01000001
Gammaproteobacteria
Marinobacter antarcticus [FRAQ]
2195438
2195513
+
Lys
TTT
[ENA]
¡û
>W1710589998
FRAQ01000001
Gammaproteobacteria
Marinobacter antarcticus [FRAQ]
2195586
2195661
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK