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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290071 (80 seq.)
>W1710885604
LMXI01000005
Gammaproteobacteria
endosymbiont of Ridgeia piscesae [LMXI]
6993
7069
+
Ile
GAT
[ENA]
¡û
>W1711129832
LUUJ01000108
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
3978
3902
-
Ile
GAT
[ENA]
¡û
>W1711129865
LUUK01000077
Gammaproteobacteria
Methylomonas koyamae [LUUK]
1863
1939
+
Ile
GAT
[ENA]
¡û
>W1711129926
LUUL01000133
Gammaproteobacteria
Methylomonas koyamae [LUUL]
1787
1863
+
Ile
GAT
[ENA]
¡û
>W1711147744
LVJW01000006
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVJW]
1666850
1666926
+
Ile
GAT
[ENA]
¡û
>W1711147816
LVJY01000003
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVJY]
497219
497143
-
Ile
GAT
[ENA]
¡û
>W1711147851
LVJZ01000003
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVJZ]
1333621
1333697
+
Ile
GAT
[ENA]
¡û
>W1711147892
LVKA01000008
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVKA]
156032
156108
+
Ile
GAT
[ENA]
¡û
>W1711309707
MARB01000011
Gammaproteobacteria
Candidatus Thiodiazotropha endolucinida [MARB]
71265
71341
+
Ile
GAT
[ENA]
¡û
>W1711494831
MKMC01000006
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
133408
133484
+
Ile
GAT
[ENA]
¡û
>W1711494846
MKMC01000011
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
93737
93661
-
Ile
GAT
[ENA]
¡û
>W1711494856
MKMC01000026
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
3393
3317
-
Ile
GAT
[ENA]
¡û
>W1711494858
MKMC01000028
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
3393
3317
-
Ile
GAT
[ENA]
¡û
>W1711494860
MKMC01000031
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
15625
15549
-
Ile
GAT
[ENA]
¡û
>W1711494880
MKMC01000100
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
191419
191343
-
Ile
GAT
[ENA]
¡û
>W1711767943
MVBD01000022
Gammaproteobacteria
Marinicella sediminis F2 [MVBD]
3402
3326
-
Ile
GAT
[ENA]
¡û
>W131217720
ATXB01000001
Gammaproteobacteria
Methylohalobius crimeensis 10Ki [ATXB]
2014426
2014350
-
Ile
GAT
[ENA]
¡û
>W131217731
ATXB01000002
Gammaproteobacteria
Methylohalobius crimeensis 10Ki [ATXB]
714204
714280
+
Ile
GAT
[ENA]
¡û
>w018075
AASF01001544
Gammaproteobacteria
Candidatus Endoriftia persephone 'Hot96 1+Hot96 2' [AASF]
1234
1312
+
Ile
GAT
[ENA]
¡û
>WENV180209760
OBAL01019044
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
4
80
+
Ile
GAT
[ENA]
¢þ
>WENV180242129
OBDI01095407
[OBDI] metagenome; diffuse fluid
281
205
-
Ile
GAT
[ENA]
¢þ
>WENV180282490
OBIC01000030
[OBIC] beach sand metagenome; beach sand
1171
1095
-
Ile
GAT
[ENA]
¢þ
>WENV180293926
OBIY01004769
[OBIY] beach sand metagenome; beach sand
2046
1970
-
Ile
GAT
[ENA]
¢þ
>WENV180309488
OBJS01002512
[OBJS] beach sand metagenome; beach sand
1631
1555
-
Ile
GAT
[ENA]
¢þ
>WENV180327217
OBKT01010338
[OBKT] soil metagenome; soil
664
588
-
Ile
GAT
[ENA]
¢þ
>WENV180346437
OBLN01097938
[OBLN] sediment metagenome; sediment
4
80
+
Ile
GAT
[ENA]
¢þ
>WENV180363493
OBNY01076522
[OBNY] marine metagenome; ENVO:00002010
270
194
-
Ile
GAT
[ENA]
¢þ
>WENV180693613
OCZS011382530
[OCZS] soil metagenome; soil
132
208
+
Ile
GAT
[ENA]
¢þ
>WENV181144305
OEHO01002368
[OEHO] metagenome; unknown
113
189
+
Ile
GAT
[ENA]
¢þ
>WENV181163900
OEIQ01330803
[OEIQ] soil metagenome; soil
127
51
-
Ile
GAT
[ENA]
¢þ
>WENV181173396
OEIV011442428
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
38
114
+
Ile
GAT
[ENA]
¢þ
>WENV181231526
OFEK01034289
[OFEK] activated sludge metagenome; Anaerobic digester
88
164
+
Ile
GAT
[ENA]
¢þ
>WENV181838538
OGVN01002724
[OGVN] freshwater metagenome; freshwater
178
254
+
Ile
GAT
[ENA]
¢þ
>WENV181843207
OGVU01003262
[OGVU] freshwater metagenome; freshwater
192
268
+
Ile
GAT
[ENA]
¢þ
>WENV182561168
OJDV01010468
[OJDV] seawater metagenome; Sea water
244
320
+
Ile
GAT
[ENA]
¢þ
>WENV183665087
ORJL010438955
[ORJL] groundwater metagenome; groundwater
700
624
-
Ile
GAT
[ENA]
¢þ
>WENV170557313
CXWL01024005
[CXWL] groundwater metagenome; biofilm material
1761
1685
-
Ile
GAT
[ENA]
¢þ
>WENV170599567
FUWD010080361
[FUWD] metagenome; unknown
422
498
+
Ile
GAT
[ENA]
¢þ
>WENV170625012
FUWD013190049
[FUWD] metagenome; unknown
479
555
+
Ile
GAT
[ENA]
¢þ
>WENV170633268
FUWD013393545
[FUWD] metagenome; unknown
479
555
+
Ile
GAT
[ENA]
¢þ
>WENV170650694
JRYE01010749
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
114
38
-
Ile
GAT
[ENA]
¢þ
>WENV170662346
JXWW01044511
[JXWW] soil metagenome; rice field; organic GM Plot
109
185
+
Ile
GAT
[ENA]
¢þ
>C181004559
AP018052
Gammaproteobacteria
Thiohalobacter thiocyanaticus FOKN1 [AP018052]
2899740
2899664
-
Ile
GAT
-
¡û
>C181088656
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
830155
830231
+
Ile
GAT
-
¡û
>C181088659
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
1496464
1496540
+
Ile
GAT
-
¡û
>C181088672
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
4533239
4533163
-
Ile
GAT
-
¡û
>W141807221
JPOG01000001
Gammaproteobacteria
Algiphilus aromaticivorans DG1253 [JPOG]
3169091
3169015
-
Ile
GAT
[ENA]
¡û
>W1910228701
FNVW02001120
Gammaproteobacteria
methanotrophic bacterial endosymbiont of Bathymodiolus sp. [FNVW]
5389
5313
-
Ile
GAT
[ENA]
¡û
>W1910923668
NIHB01000010
Gammaproteobacteria
Marinicella litoralis KMM 3900 [NIHB]
3675
3599
-
Ile
GAT
[ENA]
¡û
>W1911817817
QZMU01000001
Gammaproteobacteria
Thiohalobacter thiocyanaticus Hrh1 [QZMU]
2363401
2363477
+
Ile
GAT
[ENA]
¡û
>C151001099
AP012978
Gammaproteobacteria
endosymbiont of unidentified scaly snail isolate Monju [AP012978]
2211769
2211693
-
Ile
GAT
[Ensembl]
¡û
>W11168381
AFOC01000137
Gammaproteobacteria
endosymbiont of Riftia pachyptila Riftia pachyptila (vent Ph05) [AFOC]
2145
2221
+
Ile
GAT
[ENA]
¡û
>W11177243
AFZB01000059
Gammaproteobacteria
endosymbiont of Tevnia jerichonana Tevnia jerichonana (vent Tica) [AFZB]
4020
3944
-
Ile
GAT
[ENA]
¡û
>C161072106
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
792569
792645
+
Ile
GAT
[Ensembl]
¡û
>C161072109
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
1474673
1474749
+
Ile
GAT
[Ensembl]
¡û
>C161072122
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
4458529
4458453
-
Ile
GAT
[Ensembl]
¡û
>W1610046499
BBCK01000181
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
4077
4001
-
Ile
GAT
[ENA]
¡û
>W1610594333
LDXT01000057
Gammaproteobacteria
endosymbiont of Ridgeia piscesae [LDXT]
3810
3886
+
Ile
GAT
[ENA]
¡û
>W1610747530
LMXI01000005
Gammaproteobacteria
endosymbiont of Ridgeia piscesae [LMXI]
6993
7069
+
Ile
GAT
[ENA]
¡û
>W1610940905
LUUJ01000108
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
3978
3902
-
Ile
GAT
[ENA]
¡û
>W1610940938
LUUK01000077
Gammaproteobacteria
Methylomonas koyamae [LUUK]
1863
1939
+
Ile
GAT
[ENA]
¡û
>W1610940999
LUUL01000133
Gammaproteobacteria
Methylomonas koyamae [LUUL]
1787
1863
+
Ile
GAT
[ENA]
¡û
>ENV001284
AY590664
Environmental sample from ENV division of INSDC
393
315
-
Ile
GAT
[ENA]
>ENV001286
AY590665
Environmental sample from ENV division of INSDC
393
315
-
Ile
GAT
[ENA]
>ENV001288
AY590666
Environmental sample from ENV division of INSDC
393
315
-
Ile
GAT
[ENA]
>ENV001290
AY590667
Environmental sample from ENV division of INSDC
393
315
-
Ile
GAT
[ENA]
>ENV001292
AY590668
Environmental sample from ENV division of INSDC
393
315
-
Ile
GAT
[ENA]
>ENV001294
AY590680
Environmental sample from ENV division of INSDC
393
315
-
Ile
GAT
[ENA]
>ENV001296
AY590681
Environmental sample from ENV division of INSDC
391
313
-
Ile
GAT
[ENA]
>ENV001298
AY590682
Environmental sample from ENV division of INSDC
394
316
-
Ile
GAT
[ENA]
>ENV001300
AY590683
Environmental sample from ENV division of INSDC
396
318
-
Ile
GAT
[ENA]
>ENV001302
AY590684
Environmental sample from ENV division of INSDC
396
318
-
Ile
GAT
[ENA]
>ENV001304
AY590685
Environmental sample from ENV division of INSDC
396
318
-
Ile
GAT
[ENA]
>ENV001449
AY932859
Environmental sample from ENV division of INSDC
558
636
+
Ile
GAT
[ENA]
>ENV001450
AY932860
Environmental sample from ENV division of INSDC
557
635
+
Ile
GAT
[ENA]
>ENV002780
AY934292
Environmental sample from ENV division of INSDC
133
211
+
Ile
GAT
[ENA]
>ENV002836
AY934323
Environmental sample from ENV division of INSDC
133
211
+
Ile
GAT
[ENA]
>W1710043295
BBCK01000181
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
4077
4001
-
Ile
GAT
[ENA]
¡û
>W1710084650
BDMN01000030
Gammaproteobacteria
Bathymodiolus platifrons methanotrophic gill symbiont [BDMN]
375
451
+
Ile
GAT
[ENA]
¡û
>W1710713785
LDXT01000057
Gammaproteobacteria
endosymbiont of Ridgeia piscesae [LDXT]
3810
3886
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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