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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290456 (47 seq.)
>W131214490
ATUF01000002
Actinomycetota
Varibaculum cambriense DSM 15806 [ATUF]
995329
995404
+
Arg
ACG
[ENA]
¡û
>W1711718031
MTHC01000027
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
5918
5843
-
Arg
ACG
[ENA]
¡û
>C171096256
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
3561565
3561490
-
Arg
ACG
-
¡û
>W131217851
ATXE01000001
Actinomycetota
Aestuariimicrobium kwangyangense DSM 21549 [ATXE]
588557
588630
+
Arg
ACG
[ENA]
¡û
>WENV180117253
OARD01011259
[OARD] human gut metagenome; ENVO:feces
109
34
-
Arg
ACG
[ENA]
¡û
>WENV180160575
OAVC01003032
[OAVC] human gut metagenome; faeces
1695
1620
-
Arg
ACG
[ENA]
¡û
>WENV180172408
OAVX01002275
[OAVX] human gut metagenome; faeces
67
142
+
Arg
ACG
[ENA]
¡û
>WENV180193226
OAZW01000226
[OAZW] human gut metagenome; faeces
29117
29042
-
Arg
ACG
[ENA]
¡û
>WENV180402421
OBRP01000737
[OBRP] human gut metagenome; ENVO:feces
2588
2513
-
Arg
ACG
[ENA]
¡û
>WENV180407223
OBUQ01000718
[OBUQ] human gut metagenome; faeces
4771
4846
+
Arg
ACG
[ENA]
¡û
>WENV180420494
OBVO01004642
[OBVO] human gut metagenome; faeces
183
258
+
Arg
ACG
[ENA]
¡û
>WENV180438491
OBWS01000035
[OBWS] human gut metagenome; faeces
12221
12296
+
Arg
ACG
[ENA]
¡û
>WENV180444096
OBWZ01000117
[OBWZ] human gut metagenome; faeces
1569
1644
+
Arg
ACG
[ENA]
¡û
>WENV180473844
OBYR01010014
[OBYR] human gut metagenome; faeces
189
264
+
Arg
ACG
[ENA]
¡û
>WENV180483959
OBZH01006432
[OBZH] human gut metagenome; faeces
1593
1518
-
Arg
ACG
[ENA]
¡û
>WENV180492501
OBZW01016178
[OBZW] human gut metagenome; faeces
148
223
+
Arg
ACG
[ENA]
¡û
>WENV180494025
OBZZ01003026
[OBZZ] human gut metagenome; faeces
90
15
-
Arg
ACG
[ENA]
¡û
>WENV180498920
OCAG01007221
[OCAG] human gut metagenome; faeces
135
210
+
Arg
ACG
[ENA]
¡û
>WENV181187135
OENY01000058
[OENY] human gut metagenome; human gut
13430
13355
-
Arg
ACG
[ENA]
¡û
>WENV181311304
OFJB01000683
[OFJB] sludge metagenome; sludge
260
185
-
Arg
ACG
[ENA]
¡û
>W141206537
AZMI01000003
Actinomycetota
Varibaculum cambriense DORA_20 [AZMI]
175622
175547
-
Arg
ACG
[ENA]
¡û
>WENV182411098
OIFN01001665
[OIFN] human gut metagenome; stool
6
81
+
Arg
ACG
[ENA]
¡û
>WENV182413007
OIFX01000023
[OIFX] human gut metagenome; stool
156746
156821
+
Arg
ACG
[ENA]
¡û
>WENV182811778
OJXL01009954
[OJXL] human gut metagenome; human gut
560
632
+
Arg
ACG
[ENA]
¡û
>WENV182825109
OKCG01003232
[OKCG] human gut metagenome; human gut
427
502
+
Arg
ACG
[ENA]
¡û
>WENV182826418
OKCQ01001711
[OKCQ] human gut metagenome; human gut
640
715
+
Arg
ACG
[ENA]
¡û
>WENV182827304
OKCX01006793
[OKCX] human gut metagenome; human gut
165
240
+
Arg
ACG
[ENA]
¡û
>WENV182832341
OKEM01000041
[OKEM] human gut metagenome; human gut
54481
54556
+
Arg
ACG
[ENA]
¡û
>WENV182843376
OKIM01000037
[OKIM] human gut metagenome; human gut
50038
50113
+
Arg
ACG
[ENA]
¡û
>WENV182857583
OKNX01011173
[OKNX] human gut metagenome; human gut
405
330
-
Arg
ACG
[ENA]
¡û
>WENV182858342
OKOC01010076
[OKOC] human gut metagenome; human gut
115
190
+
Arg
ACG
[ENA]
¡û
>WENV182859735
OKOP01001004
[OKOP] human gut metagenome; human gut
4814
4739
-
Arg
ACG
[ENA]
¡û
>WENV183409923
OMAG01018617
[OMAG] human gut metagenome; feces
791
716
-
Arg
ACG
[ENA]
¡û
>W1910229294
FNWI01000004
Actinomycetota
Varibaculum sp. Marseille-P2802 [FNWI]
1001766
1001691
-
Arg
ACG
[ENA]
¡û
>W1911595153
PNGC01000002
Actinomycetota
Varibaculum cambriense UMB0744 [PNGC]
226140
226065
-
Arg
ACG
[ENA]
¡û
>W1810187889
PKHX01000003
Actinomycetota
Varibaculum cambriense UMB0796 [PKHX]
232
157
-
Arg
ACG
[ENA]
¡û
>W2010272085
CABKTW020000002
Actinomycetota
Nigerium massiliense [CABKTW]
980888
980963
+
Arg
ACG
[ENA]
¡û
>W2010383270
FNWI01000004
Actinomycetota
Varibaculum sp. Marseille-P2802 [FNWI]
1001766
1001691
-
Arg
ACG
[ENA]
¡û
>W2010739089
JACJFY010000001
Actinomycetota
Tessaracoccus sp. MC1865 [JACJFY]
610745
610670
-
Arg
ACG
[ENA]
¡û
>W2011204200
PNGC01000002
Actinomycetota
Varibaculum cambriense UMB0744 [PNGC]
226140
226065
-
Arg
ACG
[ENA]
¡û
>W2011413402
REFW01000001
Actinomycetota
Tessaracoccus sp. JDX10 [REFW]
1131615
1131688
+
Arg
ACG
[ENA]
¡û
>W2011950246
UWNY01000001
Actinomycetota
Varibaculum sp. Marseille-P5644 [UWNY]
95404
95329
-
Arg
ACG
[ENA]
¡û
>W2110287849
JACYIZ010000004
Actinomycetota
Aestuariimicrobium ganziense YIM S02566 [JACYIZ]
68115
68190
+
Arg
ACG
[ENA]
¡û
>C211310326
CP072596
Actinomycetota
Tessaracoccus sp. MC1865 [CP072596]
298034
298109
+
Arg
ACG
-
¡û
>W1510061622
CCYM01000002
Actinomycetota
Nigerium massiliense SIT7 [CCYM]
980888
980963
+
Arg
ACG
[ENA]
¡û
>C241273653
CP126959
Actinomycetota
Varibaculum cambriense UMB0796 [CP126959]
2080265
2080190
-
Arg
ACG
-
¡û
>W1610907711
LSDN01000028
Actinomycetota
Varibaculum cambriense [LSDN]
4843
4768
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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