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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290467 (97 seq.)
>W1710926757
LOEL01000029
Bacteroidota
Porphyromonas gingivalis [LOEL]
8744
8819
+
Lys
TTT
[ENA]
¡û
>W131165913
ARBY01000020
Bacteroidota
Porphyromonas macacae DSM 20710 [ARBY]
18823
18750
-
Lys
TTT
[ENA]
¡û
>W131240996
BAOU01000030
Bacteroidota
Porphyromonas crevioricanis JCM 15906 [BAOU]
27307
27234
-
Lys
TTT
[ENA]
¡û
>W131241041
BAOV01000020
Bacteroidota
Porphyromonas crevioricanis JCM 13913 [BAOV]
40634
40561
-
Lys
TTT
[ENA]
¡û
>W131111434
APMB01000136
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
14451
14526
+
Lys
TTT
[ENA]
¡û
>W131175792
ARJN01000038
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
22956
22881
-
Lys
TTT
[ENA]
¡û
>W1712084864
NHRU01000003
Bacteroidota
Porphyromonas gingivalis [NHRU]
212050
211975
-
Lys
TTT
[ENA]
¡û
>C016383
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
1917252
1917177
-
Lys
TTT
[Ensembl]
¡û
>WENV180004003
FLRQ01004367
[FLRQ] metagenome; saliva
7
80
+
Lys
TTT
[ENA]
¢þ
>WENV180006889
FLRZ01012427
[FLRZ] metagenome; saliva
1402
1475
+
Lys
TTT
[ENA]
¢þ
>WENV180007689
FLSA01188301
[FLSA] metagenome; saliva
26
99
+
Lys
TTT
[ENA]
¢þ
>WENV180010921
FLSI01020354
[FLSI] metagenome; saliva
427
354
-
Lys
TTT
[ENA]
¢þ
>WENV180733635
ODGZ01000393
[ODGZ] human metagenome; G_DNA_Supragingival plaque
5149
5222
+
Lys
TTT
[ENA]
¢þ
>W141074423
ASYL01000035
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
14624
14699
+
Lys
TTT
[ENA]
¡û
>WENV180986964
ODVK01002519
[ODVK] human metagenome; G_DNA_Supragingival plaque
5274
5201
-
Lys
TTT
[ENA]
¢þ
>WENV181158496
OEIH01001893
[OEIH] human metagenome; G_DNA_Supragingival plaque
1393
1320
-
Lys
TTT
[ENA]
¢þ
>W141145632
AWUU01000068
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
14368
14293
-
Lys
TTT
[ENA]
¡û
>W141145674
AWUV01000084
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
27272
27197
-
Lys
TTT
[ENA]
¡û
>W141145720
AWUW01000102
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
14622
14547
-
Lys
TTT
[ENA]
¡û
>W141145965
AWVC01000117
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
6008
6083
+
Lys
TTT
[ENA]
¡û
>W141145983
AWVD01000058
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
14431
14506
+
Lys
TTT
[ENA]
¡û
>W141146023
AWVE01000021
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
5094
5019
-
Lys
TTT
[ENA]
¡û
>WENV182004660
OHBE01000284
[OHBE] human gut metagenome; faeces
53027
52954
-
Lys
TTT
[ENA]
¢þ
>W141226976
BAKQ01000026
Bacteroidota
Porphyromonas macacae JCM 13914 [BAKQ]
13348
13275
-
Lys
TTT
[ENA]
¡û
>W141227053
BAKS01000011
Bacteroidota
Porphyromonas macacae JCM 15984 [BAKS]
27196
27269
+
Lys
TTT
[ENA]
¡û
>C08007286
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
1957668
1957743
+
Lys
TTT
[Ensembl]
¡û
>WENV183507905
OMGZ01000247
[OMGZ] human oral metagenome; human oral
219
146
-
Lys
TTT
[ENA]
¢þ
>WENV183510944
OMHT01004713
[OMHT] human oral metagenome; human oral
355
428
+
Lys
TTT
[ENA]
¢þ
>C181102094
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
1688576
1688503
-
Lys
TTT
-
¡û
>C181102158
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
313544
313471
-
Lys
TTT
-
¡û
>C181102199
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
896707
896634
-
Lys
TTT
-
¡û
>C181102232
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
2296348
2296275
-
Lys
TTT
-
¡û
>C181102307
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
124064
123991
-
Lys
TTT
-
¡û
>C181102314
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
732959
733032
+
Lys
TTT
-
¡û
>C181102399
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
586548
586475
-
Lys
TTT
-
¡û
>C181102445
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
1300098
1300025
-
Lys
TTT
-
¡û
>C181102494
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
1458472
1458399
-
Lys
TTT
-
¡û
>C181102513
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
560373
560446
+
Lys
TTT
-
¡û
>C181102563
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
1343477
1343550
+
Lys
TTT
-
¡û
>C181123590
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
1983565
1983638
+
Lys
TTT
-
¡û
>C181123642
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
1959888
1959961
+
Lys
TTT
-
¡û
>C181123705
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
1917251
1917178
-
Lys
TTT
-
¡û
>C181213904
LS483447
Bacteroidota
Porphyromonas crevioricanis NCTC12858 [LS483447]
1764115
1764188
+
Lys
TTT
-
¡û
>W1910371015
FUFB01000018
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
7939
7866
-
Lys
TTT
[ENA]
¡û
>W1910371073
FUFC01000027
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
100681
100608
-
Lys
TTT
[ENA]
¡û
>W1910371108
FUFD01000035
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
8688
8761
+
Lys
TTT
[ENA]
¡û
>W1910371139
FUFE01000017
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
8700
8773
+
Lys
TTT
[ENA]
¡û
>W1910371223
FUFG01000012
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
74301
74228
-
Lys
TTT
[ENA]
¡û
>W1910371261
FUFH01000013
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
433
360
-
Lys
TTT
[ENA]
¡û
>W1910371317
FUFI01000012
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
480
407
-
Lys
TTT
[ENA]
¡û
>W1910371352
FUFJ01000023
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
8696
8769
+
Lys
TTT
[ENA]
¡û
>W1910372552
FUGF01000010
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
35657
35584
-
Lys
TTT
[ENA]
¡û
>W1910372606
FUGG01000012
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
27277
27204
-
Lys
TTT
[ENA]
¡û
>W1911247384
NSLL01000014
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
42322
42249
-
Lys
TTT
[ENA]
¡û
>W1911247435
NSLM01000027
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
8747
8820
+
Lys
TTT
[ENA]
¡û
>W1911247476
NSLN01000045
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
15436
15509
+
Lys
TTT
[ENA]
¡û
>W1911247515
NSLO01000029
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
8744
8817
+
Lys
TTT
[ENA]
¡û
>W1911247546
NSLP01000014
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
41630
41557
-
Lys
TTT
[ENA]
¡û
>W1911247608
NSLQ01000076
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
992
1065
+
Lys
TTT
[ENA]
¡û
>W1911247634
NSLR01000014
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
43193
43120
-
Lys
TTT
[ENA]
¡û
>W1911247696
NSLS01000036
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
4498
4571
+
Lys
TTT
[ENA]
¡û
>W1911247722
NSLT01000016
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
9023
9096
+
Lys
TTT
[ENA]
¡û
>W1911247775
NSLU01000080
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
9546
9619
+
Lys
TTT
[ENA]
¡û
>W1911247790
NSLV01000003
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
73724
73651
-
Lys
TTT
[ENA]
¡û
>W1911247869
NSLW01000033
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
623
550
-
Lys
TTT
[ENA]
¡û
>W1911247893
NSLX01000010
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
42121
42048
-
Lys
TTT
[ENA]
¡û
>W1911709114
QPGS01000008
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
42546
42473
-
Lys
TTT
[ENA]
¡û
>W1810573737
QEKY01000014
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
3335
3408
+
Lys
TTT
[ENA]
¡û
>C151089053
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
1938434
1938359
-
Lys
TTT
-
¡û
>C151089101
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
1895222
1895147
-
Lys
TTT
-
¡û
>C11117291
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
86534
86609
+
Lys
TTT
[Ensembl]
¡û
>W1511328253
JQJB01000013
Bacteroidota
Porphyromonas crevioricanis COT-253 OH2125 [JQJB]
92643
92570
-
Lys
TTT
[ENA]
¡û
>W1511328286
JQJC01000022
Bacteroidota
Porphyromonas crevioricanis COT-253 OH1447 [JQJC]
45458
45531
+
Lys
TTT
[ENA]
¡û
>W1511328376
JQJE01000038
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
42487
42562
+
Lys
TTT
[ENA]
¡û
>W1511336124
JQZY01000009
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
219722
219647
-
Lys
TTT
[ENA]
¡û
>W1511336351
JRAE01000017
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
91793
91868
+
Lys
TTT
[ENA]
¡û
>W1511336411
JRAF01000049
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
96869
96794
-
Lys
TTT
[ENA]
¡û
>W1511336449
JRAG01000019
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
91100
91175
+
Lys
TTT
[ENA]
¡û
>W1511336545
JRAI01000050
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
278
353
+
Lys
TTT
[ENA]
¡û
>W1511336564
JRAJ01000002
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
57767
57842
+
Lys
TTT
[ENA]
¡û
>W1511336627
JRAK01000089
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
29492
29417
-
Lys
TTT
[ENA]
¡û
>W1511336658
JRAL01000015
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
124517
124592
+
Lys
TTT
[ENA]
¡û
>W1511336822
JRAQ01000013
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
220606
220681
+
Lys
TTT
[ENA]
¡û
>W1511336958
JRAT01000030
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
4769
4694
-
Lys
TTT
[ENA]
¡û
>W1511343791
JRFA01000008
Bacteroidota
Porphyromonas macacae COT-192 OH2859 [JRFA]
28368
28441
+
Lys
TTT
[ENA]
¡û
>W1511343854
JRFB01000011
Bacteroidota
Porphyromonas macacae COT-192 OH2631 [JRFB]
625600
625673
+
Lys
TTT
[ENA]
¡û
>W1511343951
JRFD01000053
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
19692
19617
-
Lys
TTT
[ENA]
¡û
>C161018123
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
27622
27697
+
Lys
TTT
[Ensembl]
¡û
>C161046931
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
1981652
1981727
+
Lys
TTT
-
¡û
>W121073555
AJZS01000050
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
14757
14832
+
Lys
TTT
[ENA]
¡û
>W1610060555
BCBV01000106
Bacteroidota
Porphyromonas gingivalis [BCBV]
42523
42448
-
Lys
TTT
[ENA]
¡û
>W1610784250
LOEL01000029
Bacteroidota
Porphyromonas gingivalis [LOEL]
8744
8819
+
Lys
TTT
[ENA]
¡û
>W1710017929
ASYN01000119
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
14452
14527
+
Lys
TTT
[ENA]
¡û
>W1710017993
ASYO01000148
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
14443
14518
+
Lys
TTT
[ENA]
¡û
>W1710018002
ASYP01000028
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
2411
2486
+
Lys
TTT
[ENA]
¡û
>W1710057810
BCBV01000106
Bacteroidota
Porphyromonas gingivalis [BCBV]
42523
42448
-
Lys
TTT
[ENA]
¡û
>W1710601454
FUXH01000009
Bacteroidota
Porphyromonas crevioricanis [FUXH]
45377
45450
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK