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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290492 (34 seq.)
>W1710805041
LJZR01000016
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
121902
121974
+
Thr
TGT
[ENA]
¡û
>W1711190037
LWRO01000011
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
40246
40318
+
Thr
TGT
[ENA]
¡û
>W1711229697
LXYR01000013
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
67960
68033
+
Thr
TGT
[ENA]
¡û
>W1711629802
MPPI01000065
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
1300
1228
-
Thr
TGT
[ENA]
¡û
>W1711666773
MRCG01000018
Cyanobacteriota
Phormidium tenue NIES-30 [MRCG]
118686
118758
+
Thr
TGT
[ENA]
¡û
>C171000055
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
2947912
2947840
-
Thr
TGT
-
¡û
>C171000118
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
2947912
2947840
-
Thr
TGT
-
¡û
>W131036013
AJUB01000011
Cyanobacteriota
Leptolyngbyaceae cyanobacterium JSC-12 JSC-12 [AJUB]
570302
570230
-
Thr
TGT
[ENA]
¡û
>W131036290
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
3171547
3171619
+
Thr
TGT
[ENA]
¡û
>W131036420
ALVP01000027
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
14275
14203
-
Thr
TGT
[ENA]
¡û
>W141038463
ALVV02000057
Cyanobacteriota
Leptolyngbya sp. PCC 6406 [ALVV]
144655
144583
-
Thr
TGT
[ENA]
¡û
>W141038723
ALWC01000008
Cyanobacteriota
Synechococcus sp. PCC 7336 [ALWC]
248644
248716
+
Thr
TGT
[ENA]
¡û
>WENV181233763
OFET01000076
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
44850
44778
-
Thr
TGT
[ENA]
¢þ
>WENV181855451
OGWL01019669
[OGWL] freshwater metagenome; freshwater
141
69
-
Thr
TGT
[ENA]
¢þ
>C08000563
CP000828
Cyanobacteriota
Acaryochloris marina MBIC11017 [CP000828]
2715788
2715716
-
Thr
TGT
[Ensembl]
¡û
>WENV170995700
MWWF01040582
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
150
78
-
Thr
TGT
[ENA]
¢þ
>C181004824
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
3986340
3986412
+
Thr
TGT
-
¡û
>W1911219945
NRTA01000038
Cyanobacteriota
Leptolyngbya sp. BC1307 [NRTA]
36858
36930
+
Thr
TGT
[ENA]
¡û
>W1810267667
PQWO01000017
Cyanobacteriota
Acaryochloris thomasi RCC1774 [PQWO]
87716
87788
+
Thr
TGT
[ENA]
¡û
>W1810366274
PVWG01000068
Cyanobacteriota
Phormidesmis priestleyi ULC007 [PVWG]
1262
1190
-
Thr
TGT
[ENA]
¡û
>W1810366398
PVWK01000053
Cyanobacteriota
Stenomitos frigidus ULC18 [PVWK]
1596
1524
-
Thr
TGT
[ENA]
¡û
>W1810398626
PYER01000061
Cyanobacteriota
filamentous cyanobacterium CCT1 [PYER]
6085
6157
+
Thr
TGT
[ENA]
¡û
>W1810400251
PYFY01000175
Cyanobacteriota
filamentous cyanobacterium CCP4 [PYFY]
6033
6105
+
Thr
TGT
[ENA]
¡û
>W1810401298
PYGV01000203
Cyanobacteriota
filamentous cyanobacterium CCP3 [PYGV]
4805
4733
-
Thr
TGT
[ENA]
¡û
>W1511108021
JJML01000045
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
10695
10767
+
Thr
TGT
[ENA]
¡û
>W1511324007
JQFA01000002
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
2950094
2950166
+
Thr
TGT
[ENA]
¡û
>W11160125
AFEJ01000208
Cyanobacteriota
Acaryochloris sp. CCMEE 5410 [AFEJ]
77718
77790
+
Thr
TGT
[ENA]
¡û
>C161002649
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
135783
135855
+
Thr
TGT
[Ensembl]
¡û
>W1610057116
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
5442640
5442712
+
Thr
TGT
[ENA]
¡û
>C131004401
CP003591
Cyanobacteriota
Geitlerinema sp. PCC 7407 [CP003591]
4239252
4239180
-
Thr
TGT
[Ensembl]
¡û
>W1610668898
LJZR01000016
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
121902
121974
+
Thr
TGT
[ENA]
¡û
>W1610992156
LWRO01000011
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
40246
40318
+
Thr
TGT
[ENA]
¡û
>W1611013567
LXYR01000013
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
67960
68033
+
Thr
TGT
[ENA]
¡û
>W1710053815
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
5442640
5442712
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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