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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290520 (95 seq.)
>W1710879533
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
843130
843055
-
Val
TAC
[ENA]
¡û
>W1710893364
LNER01000299
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
859
934
+
Val
TAC
[ENA]
¡û
>W1710907331
LNOS01000023
Alphaproteobacteria
Sphingomonas sp. WG [LNOS]
49060
48985
-
Val
TAC
[ENA]
¡û
>W1711009520
LQQT01000005
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
143169
143244
+
Val
TAC
[ENA]
¡û
>W1711073131
LSIG01000110
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
119408
119483
+
Val
TAC
[ENA]
¡û
>W1711073306
LSIK01000268
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
119724
119799
+
Val
TAC
[ENA]
¡û
>W1711073683
LSIV01000025
Alphaproteobacteria
Caulobacter sp. CCH4-E1 [LSIV]
1781
1854
+
Val
TAC
[ENA]
¡û
>W1711073796
LSIY01000017
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
45795
45870
+
Val
TAC
[ENA]
¡û
>W1711074340
LSJL01000032
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
45796
45871
+
Val
TAC
[ENA]
¡û
>W1711074524
LSJP01000410
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
11960
11885
-
Val
TAC
[ENA]
¡û
>W1711074563
LSJQ01000410
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
1892
1967
+
Val
TAC
[ENA]
¡û
>W1711074594
LSJR01000187
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
45795
45870
+
Val
TAC
[ENA]
¡û
>W1711074729
LSJU01000888
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
5472
5547
+
Val
TAC
[ENA]
¡û
>W1711074777
LSJV01000149
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
44725
44650
-
Val
TAC
[ENA]
¡û
>W1711074869
LSJX01000282
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
51687
51612
-
Val
TAC
[ENA]
¡û
>W1711075588
LSKN01000289
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
44738
44663
-
Val
TAC
[ENA]
¡û
>W1711075709
LSKQ01000232
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
66438
66365
-
Val
TAC
[ENA]
¡û
>W1711179408
LWHQ01000013
Alphaproteobacteria
Methylobacterium platani [LWHQ]
75590
75665
+
Val
TAC
[ENA]
¡û
>W1711227823
LXVY01000011
Alphaproteobacteria
Sphingomonas sp. TDK1 [LXVY]
35450
35375
-
Val
TAC
[ENA]
¡û
>W131160243
AQWK01000039
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
2691
2616
-
Val
TAC
[ENA]
¡û
>W131163755
ARAA01000018
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
403295
403370
+
Val
TAC
[ENA]
¡û
>W131175668
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
766089
766164
+
Val
TAC
[ENA]
¡û
>W131186624
ARWG01000001
Alphaproteobacteria
Hyphomicrobium sp. 99 [ARWG]
1314717
1314642
-
Val
TAC
[ENA]
¡û
>C171049987
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
2518251
2518176
-
Val
TAC
-
¡û
>C171072668
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
1912643
1912718
+
Val
TAC
-
¡û
>C024967
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
4913949
4914024
+
Val
TAC
[Ensembl]
¡û
>w026480
ABAY01000106
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
15779
15854
+
Val
TAC
[ENA]
¡û
>WENV180034199
FTKP01010730
[FTKP] metagenome; soil
497
424
-
Val
TAC
[ENA]
¢þ
>WENV180292228
OBIV01358822
[OBIV] soil metagenome; Clay
118
43
-
Val
TAC
[ENA]
¢þ
>WENV181166930
OEIU01004358
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3281
3206
-
Val
TAC
[ENA]
¢þ
>WENV181227572
OFDN01018523
[OFDN] hot springs metagenome; Water
2200
2273
+
Val
TAC
[ENA]
¢þ
>WENV181414958
OGCL01002559
[OGCL] hot springs metagenome; Hot spring water
2243
2318
+
Val
TAC
[ENA]
¢þ
>W08008831
ABLP01000001
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
99459
99387
-
Val
TAC
[ENA]
¡û
>WENV182547829
OJBU01000060
[OJBU] seawater metagenome; Sea water
5263
5188
-
Val
TAC
[ENA]
¢þ
>WENV170010177
APMI01010239
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9499
9574
+
Val
TAC
[ENA]
¢þ
>WENV170650013
JRYD01003758
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
2588
2663
+
Val
TAC
[ENA]
¢þ
>WENV170680964
LFEF01039200
[LFEF] freshwater metagenome; waterbloom
7278
7353
+
Val
TAC
[ENA]
¢þ
>WENV170710105
LNFM01001153
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
57765
57690
-
Val
TAC
[ENA]
¢þ
>WENV170711824
LNFM01007624
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7146
7221
+
Val
TAC
[ENA]
¢þ
>WENV170974865
MTKY01078404
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1606
1681
+
Val
TAC
[ENA]
¢þ
>WENV171003193
NNBT01002306
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
5792
5867
+
Val
TAC
[ENA]
¢þ
>WENV171003800
NNBV01000929
[NNBV] plant metagenome; symbiotic tissue sample KVS11
88394
88319
-
Val
TAC
[ENA]
¢þ
>C181180239
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
2935419
2935344
-
Val
TAC
-
¡û
>C191002567
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
1459525
1459600
+
Val
TAC
-
¡û
>C191004245
AP018711
Alphaproteobacteria
Sphingosinicella microcystinivorans B9 [AP018711]
3016417
3016492
+
Val
TAC
-
¡û
>W141817286
JQKO01000009
Alphaproteobacteria
Methylocapsa aurea [JQKO]
174574
174499
-
Val
TAC
[ENA]
¡û
>W1910231949
FPEH01000014
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
258180
258255
+
Val
TAC
[ENA]
¡û
>C09107870
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
4175927
4175852
-
Val
TAC
[Ensembl]
¡û
>W1911708570
QOWC01000112
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
25470
25544
+
Val
TAC
[ENA]
¡û
>W1810330570
PUIV01000019
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
47923
47998
+
Val
TAC
[ENA]
¡û
>W1810677130
QKMM01000006
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
26656
26581
-
Val
TAC
[ENA]
¡û
>W1810706688
QMKH01000006
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
170997
171072
+
Val
TAC
[ENA]
¡û
>C151094749
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
3738164
3738239
+
Val
TAC
-
¡û
>W1510019746
BBXA01000027
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
229428
229353
-
Val
TAC
[ENA]
¡û
>W1510741117
CYHC01000002
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
514156
514081
-
Val
TAC
[ENA]
¡û
>W1511400975
JTHG01000368
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
2054
2129
+
Val
TAC
[ENA]
¡û
>W1511507854
JXOD01000013
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
37570
37645
+
Val
TAC
[ENA]
¡û
>W1511563223
LABX01000031
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
41084
41159
+
Val
TAC
[ENA]
¡û
>W11179071
AGFU01000044
Alphaproteobacteria
Sphingomonas elodea ATCC 31461 [AGFU]
2287
2362
+
Val
TAC
[ENA]
¡û
>C161001196
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
537983
537908
-
Val
TAC
[Ensembl]
¡û
>W121103220
AKZI01000075
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
16322
16397
+
Val
TAC
[ENA]
¡û
>W121105823
ALBQ01000039
Alphaproteobacteria
Sphingomonas sp. ATCC 31555 [ALBQ]
49004
48929
-
Val
TAC
[ENA]
¡û
>W121110801
ALIQ01000195
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
21002
20927
-
Val
TAC
[ENA]
¡û
>W1610047396
BBDG01000070
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
2384
2309
-
Val
TAC
[ENA]
¡û
>W1610535211
JRQQ01000002
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
565511
565436
-
Val
TAC
[ENA]
¡û
>W1610590443
LDRL01000122
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
45068
45143
+
Val
TAC
[ENA]
¡û
>W1610617158
LGSZ01000022
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
184868
184793
-
Val
TAC
[ENA]
¡û
>W1610631751
LIOL01000002
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
514156
514081
-
Val
TAC
[ENA]
¡û
>W1610741879
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
843130
843055
-
Val
TAC
[ENA]
¡û
>W1610753630
LNER01000299
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
859
934
+
Val
TAC
[ENA]
¡û
>W1610766345
LNOS01000023
Alphaproteobacteria
Sphingomonas sp. WG [LNOS]
49060
48985
-
Val
TAC
[ENA]
¡û
>W1610858040
LQQT01000005
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
143169
143244
+
Val
TAC
[ENA]
¡û
>W1610912436
LSIG01000110
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
119408
119483
+
Val
TAC
[ENA]
¡û
>W1610912611
LSIK01000268
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
119724
119799
+
Val
TAC
[ENA]
¡û
>W1610912988
LSIV01000025
Alphaproteobacteria
Caulobacter sp. CCH4-E1 [LSIV]
1781
1854
+
Val
TAC
[ENA]
¡û
>W1610913101
LSIY01000017
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
45795
45870
+
Val
TAC
[ENA]
¡û
>W1610913645
LSJL01000032
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
45796
45871
+
Val
TAC
[ENA]
¡û
>W1610913829
LSJP01000410
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
11960
11885
-
Val
TAC
[ENA]
¡û
>W1610913868
LSJQ01000410
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
1892
1967
+
Val
TAC
[ENA]
¡û
>W1610913899
LSJR01000187
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
45795
45870
+
Val
TAC
[ENA]
¡û
>W1610914034
LSJU01000888
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
5472
5547
+
Val
TAC
[ENA]
¡û
>W1610914082
LSJV01000149
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
44725
44650
-
Val
TAC
[ENA]
¡û
>W1610914174
LSJX01000282
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
51687
51612
-
Val
TAC
[ENA]
¡û
>W1610914893
LSKN01000289
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
44738
44663
-
Val
TAC
[ENA]
¡û
>W1610915014
LSKQ01000232
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
66438
66365
-
Val
TAC
[ENA]
¡û
>W1610987309
LWHQ01000013
Alphaproteobacteria
Methylobacterium platani [LWHQ]
75590
75665
+
Val
TAC
[ENA]
¡û
>W1611011787
LXVY01000011
Alphaproteobacteria
Sphingomonas sp. TDK1 [LXVY]
35450
35375
-
Val
TAC
[ENA]
¡û
>W1710044001
BBDG01000070
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
2384
2309
-
Val
TAC
[ENA]
¡û
>W1710515674
FNBZ01000001
Alphaproteobacteria
Bosea robiniae [FNBZ]
136451
136526
+
Val
TAC
[ENA]
¡û
>W1710550423
FOFG01000019
Alphaproteobacteria
Faunimonas pinastri A52C2 [FOFG]
23936
24011
+
Val
TAC
[ENA]
¡û
>W1710579074
FPCB01000044
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
44364
44439
+
Val
TAC
[ENA]
¡û
>W1710637680
JRQQ01000002
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
565511
565436
-
Val
TAC
[ENA]
¡û
>W1710709723
LDRL01000122
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
45068
45143
+
Val
TAC
[ENA]
¡û
>W1710742772
LGSZ01000022
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
184868
184793
-
Val
TAC
[ENA]
¡û
>W1710764636
LIOL01000002
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
514156
514081
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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