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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290573 (91 seq.)
>W1710784210
LJGT01000041
Actinomycetota
Streptomyces abyssalis [LJGT]
171488
171561
+
Met
CAT
[ENA]
¡û
>W1710784364
LJGW01000257
Actinomycetota
Streptomyces nanshensis [LJGW]
478
551
+
Met
CAT
[ENA]
¡û
>W1710784475
LJGY01000179
Actinomycetota
Streptomyces nanshensis [LJGY]
1484
1411
-
Met
CAT
[ENA]
¡û
>W1710786938
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
4448566
4448642
+
Met
CAT
[ENA]
¡û
>W1710857006
LLZU01000004
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
36542
36466
-
Met
CAT
[ENA]
¡û
>W1710860280
LMCT01000012
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
271807
271732
-
Met
CAT
[ENA]
¡û
>W1710866963
LMHX01000004
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
305264
305189
-
Met
CAT
[ENA]
¡û
>W1711183410
LWLA01000012
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
298170
298094
-
Met
CAT
[ENA]
¡û
>W1711627039
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
4197117
4197193
+
Met
CAT
[ENA]
¡û
>W131204740
ATCE01000063
Actinomycetota
Streptomyces sp. HPH0547 [ATCE]
52621
52548
-
Met
CAT
[ENA]
¡û
>W131234184
AUKO01000030
Actinomycetota
Streptomyces sp. CNT360 [AUKO]
62997
63070
+
Met
CAT
[ENA]
¡û
>W131234620
AUKW01000026
Actinomycetota
Streptomyces sp. TAA204 [AUKW]
23772
23845
+
Met
CAT
[ENA]
¡û
>W131163680
AQZX01000031
Actinomycetota
Sporichthya polymorpha DSM 43042 [AQZX]
401131
401206
+
Met
CAT
[ENA]
¡û
>C171109497
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
3213726
3213802
+
Met
CAT
-
¡û
>WENV180023389
FTHV01006243
[FTHV] metagenome; soil
2998
2922
-
Met
CAT
[ENA]
¢þ
>WENV180023525
FTHY01009543
[FTHY] metagenome; soil
2998
2922
-
Met
CAT
[ENA]
¢þ
>WENV180033221
FTKF01074642
[FTKF] metagenome; soil
328
252
-
Met
CAT
[ENA]
¢þ
>WENV180035059
FTKT01000553
[FTKT] metagenome; soil
21090
21164
+
Met
CAT
[ENA]
¢þ
>WENV181191969
OEPS010315170
[OEPS] soil metagenome; soil
296
222
-
Met
CAT
[ENA]
¢þ
>W141201034
AZAN01000002
Actinomycetota
Actinospica robiniae DSM 44927 [AZAN]
5198310
5198235
-
Met
CAT
[ENA]
¡û
>W141282722
JAIY01000008
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
166851
166775
-
Met
CAT
[ENA]
¡û
>W141282809
JAIZ01000823
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
7039
6966
-
Met
CAT
[ENA]
¡û
>WENV170565585
FJVZ01000650
[FJVZ] metagenome; soil
7760
7836
+
Met
CAT
[ENA]
¢þ
>C181116326
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
3539180
3539106
-
Met
CAT
-
¡û
>W141726623
JNBY01000089
Actinomycetota
Kitasatospora cheerisanensis KCTC 2395 [JNBY]
74131
74056
-
Met
CAT
[ENA]
¡û
>W141755549
JNWQ01000035
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
24214
24138
-
Met
CAT
[ENA]
¡û
>W141755663
JNWR01000071
Actinomycetota
Kitasatospora aureofaciens [JNWR]
2741
2817
+
Met
CAT
[ENA]
¡û
>W141756048
JNWY01000007
Actinomycetota
Kitasatospora setae [JNWY]
128494
128419
-
Met
CAT
[ENA]
¡û
>W141757015
JNXO01001789
Actinomycetota
Kitasatospora misakiensis [JNXO]
41
117
+
Met
CAT
[ENA]
¡û
>W141759673
JNZN01000139
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
44
120
+
Met
CAT
[ENA]
¡û
>W141760840
JOAI01000002
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
281066
280991
-
Met
CAT
[ENA]
¡û
>W141761787
JOAY01000039
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
41626
41702
+
Met
CAT
[ENA]
¡û
>W141763675
JOCF01000001
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
144593
144517
-
Met
CAT
[ENA]
¡û
>W141764992
JODB01002148
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
116
192
+
Met
CAT
[ENA]
¡û
>W141766005
JODS01000006
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
15237
15313
+
Met
CAT
[ENA]
¡û
>W141766917
JOEH01000005
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
131928
131853
-
Met
CAT
[ENA]
¡û
>W141768783
JOFK01000063
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
25400
25324
-
Met
CAT
[ENA]
¡û
>W141770029
JOGF01000379
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
1559
1483
-
Met
CAT
[ENA]
¡û
>W141770127
JOGG01000068
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
25414
25338
-
Met
CAT
[ENA]
¡û
>W141770192
JOGH01000069
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
42089
42164
+
Met
CAT
[ENA]
¡û
>W141770234
JOGI01000487
Actinomycetota
Streptomyces sp. NRRL F-5848 [JOGI]
680
753
+
Met
CAT
[ENA]
¡û
>W141771122
JOGY01000539
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
49
124
+
Met
CAT
[ENA]
¡û
>W141771625
JOHH01000008
Actinomycetota
Streptomyces sp. NRRL B-2030 [JOHH]
58
134
+
Met
CAT
[ENA]
¡û
>W141771901
JOHM01000780
Actinomycetota
Streptomyces sp. NRRL F-6133 [JOHM]
62
137
+
Met
CAT
[ENA]
¡û
>W141771985
JOHN01000075
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
28316
28240
-
Met
CAT
[ENA]
¡û
>W141771998
JOHO01000003
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
190031
190107
+
Met
CAT
[ENA]
¡û
>W141774332
JOJA01000001
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
43676
43751
+
Met
CAT
[ENA]
¡û
>W141818495
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
2435799
2435874
+
Met
CAT
[ENA]
¡û
>W141819677
JQMJ01000004
Actinomycetota
Streptacidiphilus rugosus AM-16 [JQMJ]
3450042
3449967
-
Met
CAT
[ENA]
¡û
>W141819767
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
5596297
5596372
+
Met
CAT
[ENA]
¡û
>W141819974
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
3470271
3470346
+
Met
CAT
[ENA]
¡û
>W09120687
ACEU01000428
Actinomycetota
Streptomyces sp. SPB78 [ACEU]
20393
20466
+
Met
CAT
[ENA]
¡û
>W1911083715
NNBO01000007
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
108004
108078
+
Met
CAT
[ENA]
¡û
>W1911243742
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
4487534
4487608
+
Met
CAT
[ENA]
¡û
>W1911494809
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
4363403
4363479
+
Met
CAT
[ENA]
¡û
>W1810073038
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
3207109
3207036
-
Met
CAT
[ENA]
¡û
>W1810073127
PEFS01000001
Actinomycetota
Streptomyces sp. CNZ279 [PEFS]
4713635
4713708
+
Met
CAT
[ENA]
¡û
>W1810120750
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
4749413
4749486
+
Met
CAT
[ENA]
¡û
>W1810121519
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
4609182
4609256
+
Met
CAT
[ENA]
¡û
>W1810173002
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
4341738
4341812
+
Met
CAT
[ENA]
¡û
>W1810394709
PYBW01000053
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
22325
22401
+
Met
CAT
[ENA]
¡û
>W1810684571
QKYN01000192
Actinomycetota
Streptacidiphilus pinicola MMS16-CNU450 [QKYN]
897
972
+
Met
CAT
[ENA]
¡û
>W1810694007
QLLT01000015
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
38754
38827
+
Met
CAT
[ENA]
¡û
>W1810907985
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
5095210
5095134
-
Met
CAT
[ENA]
¡û
>W1510013934
BBPL01000005
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
15996
16071
+
Met
CAT
[ENA]
¡û
>W1510014006
BBPM01000019
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
116529
116604
+
Met
CAT
[ENA]
¡û
>W1510014085
BBPN01000023
Actinomycetota
Streptacidiphilus jiangxiensis NBRC 100920 [BBPN]
20355
20430
+
Met
CAT
[ENA]
¡û
>W1510014149
BBPO01000022
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
68830
68755
-
Met
CAT
[ENA]
¡û
>W1510014235
BBPP01000036
Actinomycetota
Streptacidiphilus melanogenes NBRC 103184 [BBPP]
46525
46450
-
Met
CAT
[ENA]
¡û
>W1510014288
BBPQ01000011
Actinomycetota
Streptacidiphilus anmyonensis NBRC 103185 [BBPQ]
174778
174703
-
Met
CAT
[ENA]
¡û
>C11111780
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
3616969
3616894
-
Met
CAT
[Ensembl]
¡û
>W1511311676
JPRF01000448
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
4063
4139
+
Met
CAT
[ENA]
¡û
>W1511519324
JXZB01000004
Actinomycetota
Kitasatospora griseola MF730-N6 [JXZB]
1595687
1595612
-
Met
CAT
[ENA]
¡û
>W1511545173
JZKG01000026
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
58576
58500
-
Met
CAT
[ENA]
¡û
>W1511545232
JZKH01000008
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
123469
123393
-
Met
CAT
[ENA]
¡û
>W1511555637
JZWY01000183
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
20898
20822
-
Met
CAT
[ENA]
¡û
>W1511573709
LAND01000020
Actinomycetota
Streptomyces sp. WMMB 714 [LAND]
5879
5952
+
Met
CAT
[ENA]
¡û
>W1511590455
LBHA01000226
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
657
733
+
Met
CAT
[ENA]
¡û
>W1511696823
LGDO01000515
Actinomycetota
Streptomyces sp. XY431 [LGDO]
20888
20812
-
Met
CAT
[ENA]
¡û
>C161051661
CP013129
Actinomycetota
Streptomyces venezuelae ATCC 15439 [CP013129]
5259620
5259695
+
Met
CAT
-
¡û
>C161107241
LN881739
Actinomycetota
Streptomyces venezuelae ATCC 15439 [LN881739]
3803855
3803780
-
Met
CAT
-
¡û
>W1610632023
LIPO01000014
Actinomycetota
Streptomyces albus almquistii [LIPO]
59
132
+
Met
CAT
[ENA]
¡û
>W1610633259
LIQP01000067
Actinomycetota
Streptomyces albus gibsonii [LIQP]
1205
1278
+
Met
CAT
[ENA]
¡û
>W1610650793
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
4448566
4448642
+
Met
CAT
[ENA]
¡û
>W1610719387
LLZU01000004
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
36542
36466
-
Met
CAT
[ENA]
¡û
>W1610722626
LMCT01000012
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
271807
271732
-
Met
CAT
[ENA]
¡û
>W1610729309
LMHX01000004
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
305264
305189
-
Met
CAT
[ENA]
¡û
>W1710765848
LIPD01000008
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
291178
291102
-
Met
CAT
[ENA]
¡û
>W1710766409
LIPO01000014
Actinomycetota
Streptomyces albus almquistii [LIPO]
59
132
+
Met
CAT
[ENA]
¡û
>W1710767691
LIQP01000067
Actinomycetota
Streptomyces albus gibsonii [LIQP]
1205
1278
+
Met
CAT
[ENA]
¡û
>W1710769499
LISX01000001
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
712156
712229
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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