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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290585 (31 seq.)
>W1710996559
LQBN01000002
Gammaproteobacteria
Thiomicrospira sp. WB1 [LQBN]
368789
368864
+
Val
TAC
[ENA]
¡û
>W1710996561
LQBN01000002
Gammaproteobacteria
Thiomicrospira sp. WB1 [LQBN]
368996
369071
+
Val
TAC
[ENA]
¡û
>W1710996597
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1673659
1673734
+
Val
TAC
[ENA]
¡û
>W1710996599
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1673863
1673938
+
Val
TAC
[ENA]
¡û
>W131164360
ARAR01000003
Gammaproteobacteria
Hydrogenovibrio halophilus DSM 15072 [ARAR]
1465301
1465376
+
Val
TAC
[ENA]
¡û
>W131164362
ARAR01000003
Gammaproteobacteria
Hydrogenovibrio halophilus DSM 15072 [ARAR]
1465498
1465573
+
Val
TAC
[ENA]
¡û
>C025354
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
1288577
1288652
+
Val
TAC
[Ensembl]
¡û
>C025356
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
1288784
1288859
+
Val
TAC
[Ensembl]
¡û
>W141170947
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
574679
574604
-
Val
TAC
[ENA]
¡û
>W141170949
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
574424
574349
-
Val
TAC
[ENA]
¡û
>W141279835
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
1107526
1107601
+
Val
TAC
[ENA]
¡û
>W141279837
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
1107718
1107793
+
Val
TAC
[ENA]
¡û
>WENV170779744
LZQR01000179
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
129
204
+
Val
TAC
[ENA]
¢þ
>WENV170779835
LZQR01001470
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
165
90
-
Val
TAC
[ENA]
¢þ
>C191098438
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1431172
1431247
+
Val
TAC
-
¡û
>C191098440
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1431414
1431489
+
Val
TAC
-
¡û
>C191098442
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1431654
1431729
+
Val
TAC
-
¡û
>C191134035
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
1389804
1389879
+
Val
TAC
-
¡û
>C191134037
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
1390006
1390081
+
Val
TAC
-
¡û
>W141733790
JNLD01000003
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
749710
749785
+
Val
TAC
[ENA]
¡û
>W141733792
JNLD01000003
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
749984
750059
+
Val
TAC
[ENA]
¡û
>W141776930
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
599794
599869
+
Val
TAC
[ENA]
¡û
>W141776932
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
599996
600071
+
Val
TAC
[ENA]
¡û
>W141820285
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
1081730
1081655
-
Val
TAC
[ENA]
¡û
>W141820287
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
1081533
1081458
-
Val
TAC
[ENA]
¡û
>WENV069816
AACY023784495
Marine microbial communities from Global Ocean Sampling (GOS)
161
238
+
Val
TAC
[ENA]
>WENV069818
AACY023784495
Marine microbial communities from Global Ocean Sampling (GOS)
399
476
+
Val
TAC
[ENA]
>W1610851216
LQBN01000002
Gammaproteobacteria
Thiomicrospira sp. WB1 [LQBN]
368789
368864
+
Val
TAC
[ENA]
¡û
>W1610851218
LQBN01000002
Gammaproteobacteria
Thiomicrospira sp. WB1 [LQBN]
368996
369071
+
Val
TAC
[ENA]
¡û
>W1610851254
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1673659
1673734
+
Val
TAC
[ENA]
¡û
>W1610851256
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1673863
1673938
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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