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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290589 (36 seq.)
>W1710860360
LMCU01000002
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
449083
449156
+
Arg
CCG
[ENA]
¡û
>W1710867790
LMIO01000002
Actinomycetota
Leifsonia sp. Root227 [LMIO]
125398
125323
-
Arg
CCG
[ENA]
¡û
>W1710876162
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
908577
908502
-
Arg
CCG
[ENA]
¡û
>W1710921160
LNZG01000011
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
43672
43597
-
Arg
CCG
[ENA]
¡û
>W131162261
AQYK01000001
Actinomycetota
Leifsonia sp. 109 [AQYK]
1456426
1456351
-
Arg
CCG
[ENA]
¡û
>W131184620
ARTB01000001
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
831116
831191
+
Arg
CCG
[ENA]
¡û
>W131218487
ATXT01000018
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
226368
226441
+
Arg
CCG
[ENA]
¡û
>W1711505299
MKVJ01000018
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
5534
5459
-
Arg
CCG
[ENA]
¡û
>W1711961767
NCSR01000026
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
488
563
+
Arg
CCG
[ENA]
¡û
>C171111587
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
2205543
2205618
+
Arg
CCG
-
¡û
>C012841
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
675568
675493
-
Arg
CCG
[Ensembl]
¡û
>WENV180016191
FSUF01000181
[FSUF] metagenome; soil
8012
7939
-
Arg
CCG
[ENA]
¢þ
>WENV180016214
FSUF01001067
[FSUF] metagenome; soil
45
118
+
Arg
CCG
[ENA]
¢þ
>WENV180025966
FTIR01001004
[FTIR] metagenome; soil
13415
13342
-
Arg
CCG
[ENA]
¢þ
>WENV180026467
FTIT01398791
[FTIT] metagenome; soil
129
56
-
Arg
CCG
[ENA]
¢þ
>WENV180209982
OBAL01056949
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
225
299
+
Arg
CCG
[ENA]
¢þ
>WENV181166709
OEIU01001251
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
17181
17254
+
Arg
CCG
[ENA]
¢þ
>W141146510
AWVQ01000388
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
8724
8799
+
Arg
CCG
[ENA]
¡û
>W141188409
AYMR01000009
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
71633
71558
-
Arg
CCG
[ENA]
¡û
>W141223285
BADC01000860
Actinomycetota
Corynebacterium-like bacterium B27 [BADC]
3719
3644
-
Arg
CCG
[ENA]
¡û
>WENV170933937
MDTG01229381
[MDTG] marine metagenome; seawater
777
702
-
Arg
CCG
[ENA]
¢þ
>WENV170935835
MDTG01264464
[MDTG] marine metagenome; seawater
1960
1885
-
Arg
CCG
[ENA]
¢þ
>C181196614
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
2241424
2241350
-
Arg
CCG
-
¡û
>C141007898
CP006734
Actinomycetota
Leifsonia xyli subsp. cynodontis DSM 46306 [CP006734]
1930818
1930893
+
Arg
CCG
[Ensembl]
¡û
>W1810684464
QKXI01000010
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
117282
117208
-
Arg
CCG
[ENA]
¡û
>WENV040021
AACY022054976
Marine microbial communities from Global Ocean Sampling (GOS)
795
720
-
Arg
CCG
[ENA]
>W1511691438
LFYU01001402
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
155
80
-
Arg
CCG
[ENA]
¡û
>C161076863
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
3433889
3433814
-
Arg
CCG
[Ensembl]
¡û
>W1610069762
BCST01000004
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
27143
27216
+
Arg
CCG
[ENA]
¡û
>W1610722706
LMCU01000002
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
449083
449156
+
Arg
CCG
[ENA]
¡û
>W1610730136
LMIO01000002
Actinomycetota
Leifsonia sp. Root227 [LMIO]
125398
125323
-
Arg
CCG
[ENA]
¡û
>W1610738508
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
908577
908502
-
Arg
CCG
[ENA]
¡û
>W1710067135
BCST01000004
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
27143
27216
+
Arg
CCG
[ENA]
¡û
>W1710532030
FNPZ01000002
Actinomycetota
Herbiconiux ginsengi [FNPZ]
466313
466386
+
Arg
CCG
[ENA]
¡û
>W1710540791
FNXD01000003
Actinomycetota
Leifsonia sp. CL154 [FNXD]
52270
52195
-
Arg
CCG
[ENA]
¡û
>W1710568265
FOTM01000003
Actinomycetota
Leifsonia sp. CL147 [FOTM]
52328
52253
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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