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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290641 (66 seq.)
>W1710884066
LMWI01000002
Actinomycetota
Micromonospora maris [LMWI]
3588178
3588105
-
Thr
GGT
[ENA]
¡û
>W1711044155
LRMV01000004
Actinomycetota
Micromonospora rifamycinica [LRMV]
28474
28547
+
Thr
GGT
[ENA]
¡û
>W1711343703
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
4318351
4318278
-
Thr
GGT
[ENA]
¡û
>W131163613
AQZW01000002
Actinomycetota
Salinispora mooreana DSM 45549 [AQZW]
606150
606077
-
Thr
GGT
[ENA]
¡û
>W131171626
ARGI01000072
Actinomycetota
Salinispora pacifica CNS860 [ARGI]
43412
43485
+
Thr
GGT
[ENA]
¡û
>W131171670
ARGJ01000075
Actinomycetota
Salinispora pacifica CNS863 [ARGJ]
304813
304740
-
Thr
GGT
[ENA]
¡û
>W131171802
ARGM01000037
Actinomycetota
Salinispora pacifica CNT124 [ARGM]
96808
96735
-
Thr
GGT
[ENA]
¡û
>W131172549
ARGZ01000078
Actinomycetota
Salinispora arenicola CNP105 [ARGZ]
37159
37232
+
Thr
GGT
[ENA]
¡û
>W131172591
ARHA01000083
Actinomycetota
Salinispora arenicola CNS744 [ARHA]
167355
167282
-
Thr
GGT
[ENA]
¡û
>W131172846
ARHF01000085
Actinomycetota
Salinispora arenicola CNY256 [ARHF]
364750
364677
-
Thr
GGT
[ENA]
¡û
>W131173316
ARHO01000175
Actinomycetota
Salinispora pacifica CNY331 [ARHO]
271152
271079
-
Thr
GGT
[ENA]
¡û
>W131173331
ARHP01000113
Actinomycetota
Salinispora tropica CNR699 [ARHP]
114333
114260
-
Thr
GGT
[ENA]
¡û
>W131221967
AUAX01000005
Actinomycetota
Hamadaea tsunoensis DSM 44101 [AUAX]
120079
120152
+
Thr
GGT
[ENA]
¡û
>W131228814
AUGH01000007
Actinomycetota
Salinispora mooreana CNS237 [AUGH]
35441
35514
+
Thr
GGT
[ENA]
¡û
>C024796
CP000667
Actinomycetota
Salinispora tropica CNB-440 [CP000667]
4494989
4494917
-
Thr
GGT
[Ensembl]
¡û
>W141000291
ACQO01000213
Actinomycetota
Micromonospora sp. M42 [ACQO]
42267
42340
+
Thr
GGT
[ENA]
¡û
>WENV181166065
OEIS01418177
[OEIS] soil metagenome; soil
91
164
+
Thr
GGT
[ENA]
¢þ
>WENV181296873
OFHK01001324
[OFHK] soil metagenome; Clay
6048
5974
-
Thr
GGT
[ENA]
¢þ
>WENV181297070
OFHK01008031
[OFHK] soil metagenome; Clay
823
897
+
Thr
GGT
[ENA]
¢þ
>WENV181297440
OFHK01044795
[OFHK] soil metagenome; Clay
968
893
-
Thr
GGT
[ENA]
¢þ
>WENV181297957
OFHL01008420
[OFHL] soil metagenome; Clay
1477
1552
+
Thr
GGT
[ENA]
¢þ
>WENV181298261
OFHL01064998
[OFHL] soil metagenome; Clay
646
719
+
Thr
GGT
[ENA]
¢þ
>W141169277
AXVR01000001
Actinomycetota
Salinispora cortesiana CNY202 [AXVR]
17794
17867
+
Thr
GGT
[ENA]
¡û
>W141218117
AZWB01000007
Actinomycetota
Salinispora oceanensis CNT029 [AZWB]
309851
309778
-
Thr
GGT
[ENA]
¡û
>W141218218
AZWD01000012
Actinomycetota
Salinispora arenicola CNX482 [AZWD]
164835
164762
-
Thr
GGT
[ENA]
¡û
>W141218483
AZWI01000020
Actinomycetota
Salinispora arenicola CNB458 [AZWI]
116901
116828
-
Thr
GGT
[ENA]
¡û
>W141218519
AZWJ01000004
Actinomycetota
Salinispora vitiensis CNT148 [AZWJ]
158933
159006
+
Thr
GGT
[ENA]
¡û
>W141218594
AZWK01000020
Actinomycetota
Salinispora tropica CNS197 [AZWK]
114625
114552
-
Thr
GGT
[ENA]
¡û
>W141219629
AZXE01000014
Actinomycetota
Salinispora tropica CNB476 [AZXE]
115426
115353
-
Thr
GGT
[ENA]
¡û
>W141219742
AZXG01000014
Actinomycetota
Salinispora arenicola CNT800 [AZXG]
162923
162850
-
Thr
GGT
[ENA]
¡û
>W141277532
JAER01000006
Actinomycetota
Nocardioides sp. J54 [JAER]
112505
112432
-
Thr
GGT
[ENA]
¡û
>WENV170551959
CXWJ01032517
[CXWJ] wastewater metagenome; activated sludge
755
682
-
Thr
GGT
[ENA]
¢þ
>WENV170659721
JXWR01047399
[JXWR] soil metagenome; rice field; ambient CO2
256
181
-
Thr
GGT
[ENA]
¢þ
>W141452154
JFBT01000005
Actinomycetota
Cryptosporangium arvum DSM 44712 [JFBT]
2213841
2213766
-
Thr
GGT
[ENA]
¡û
>C181162653
CP028159
Actinomycetota
Plantactinospora sp. BB1 [CP028159]
5677045
5676972
-
Thr
GGT
-
¡û
>C181198580
CP031263
Actinomycetota
Micromonospora aurantiaca [CP031263]
875375
875302
-
Thr
GGT
-
¡û
>W09120564
ACES01000164
Actinomycetota
Micromonospora sp. ATCC 39149 [ACES]
18112
18039
-
Thr
GGT
[ENA]
¡û
>W141761146
JOAN01000013
Actinomycetota
Micromonospora chokoriensis [JOAN]
66973
67048
+
Thr
GGT
[ENA]
¡û
>W1910547884
FZOD01000036
Actinomycetota
Streptosporangium subroseum CGMCC 4.2132 [FZOD]
58653
58726
+
Thr
GGT
[ENA]
¡û
>W1910655962
MAGP01000107
Actinomycetota
Micromonospora chalcea DSM 43026 [MAGP]
45544
45471
-
Thr
GGT
[ENA]
¡û
>W1911653644
QDGB01000282
Actinomycetota
Micromonospora ureilytica LB19 [QDGB]
35688
35761
+
Thr
GGT
[ENA]
¡û
>W1911676252
QGSY01000218
Actinomycetota
Micromonospora arida LB32 [QGSY]
30042
30115
+
Thr
GGT
[ENA]
¡û
>W1911676727
QHHV01000250
Actinomycetota
Actinoplanes sp. ATCC 53533 [QHHV]
6700
6775
+
Thr
GGT
[ENA]
¡û
>W1911681211
QJUG01000114
Actinomycetota
Allorhizocola rhizosphaerae CPCC 204380 [QJUG]
10284
10357
+
Thr
GGT
[ENA]
¡û
>W1810356482
PVMZ01000001
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
663364
663291
-
Thr
GGT
[ENA]
¡û
>W1810608021
QGSU01000338
Actinomycetota
Micromonospora globispora S2903 [QGSU]
8153
8226
+
Thr
GGT
[ENA]
¡û
>W1810675358
QKKX01000003
Actinomycetota
Micromonospora sp. MW-13 MW13 [QKKX]
5671
5744
+
Thr
GGT
[ENA]
¡û
>W1810722145
QNTW01000112
Actinomycetota
Micromonospora provocatoris MT25 [QNTW]
6157
6230
+
Thr
GGT
[ENA]
¡û
>W10118419
ADUJ01000840
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
31808
31881
+
Thr
GGT
[ENA]
¡û
>C10109185
CP002162
Actinomycetota
Micromonospora aurantiaca ATCC 27029 [CP002162]
6205398
6205325
-
Thr
GGT
[Ensembl]
¡û
>W1511355855
JRTT01000128
Actinomycetota
Actinoplanes utahensis NRRL 12052 [JRTT]
112446
112371
-
Thr
GGT
[ENA]
¡û
>W1511400315
JTGL01000127
Actinomycetota
Micromonospora sp. HK10 [JTGL]
96821
96748
-
Thr
GGT
[ENA]
¡û
>W11123494
ADUJ01000840
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
31808
31881
+
Thr
GGT
[ENA]
¡û
>W1511545120
JZKF01000043
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
23519
23594
+
Thr
GGT
[ENA]
¡û
>W1511656669
LEKG01000029
Actinomycetota
Micromonospora sp. RV43 [LEKG]
4343
4416
+
Thr
GGT
[ENA]
¡û
>C161109670
LT594324
Actinomycetota
Micromonospora narathiwatensis DSM 45248 [LT594324]
4688212
4688139
-
Thr
GGT
-
¡û
>W121055692
AIIF01002794
Actinomycetota
Salinispora arenicola ATCC BAA-917 [AIIF]
650
577
-
Thr
GGT
[ENA]
¡û
>W1610049482
BBEZ01000942
Actinomycetota
Nocardioides sp. AN3 [BBEZ]
969
896
-
Thr
GGT
[ENA]
¡û
>W1610052471
BBHX01000915
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
326
399
+
Thr
GGT
[ENA]
¡û
>W1710045881
BBEZ01000942
Actinomycetota
Nocardioides sp. AN3 [BBEZ]
969
896
-
Thr
GGT
[ENA]
¡û
>W1710048849
BBHX01000915
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
326
399
+
Thr
GGT
[ENA]
¡û
>W1710502773
FMCR01000004
Actinomycetota
Micromonospora saelicesensis [FMCR]
122316
122241
-
Thr
GGT
[ENA]
¡û
>W1710502912
FMCU01000003
Actinomycetota
Micromonospora matsumotoense [FMCU]
436291
436218
-
Thr
GGT
[ENA]
¡û
>W1710502960
FMCV01000001
Actinomycetota
Micromonospora marina [FMCV]
400270
400197
-
Thr
GGT
[ENA]
¡û
>W1710557496
FOLB01000008
Actinomycetota
Nocardioides terrae [FOLB]
166659
166732
+
Thr
GGT
[ENA]
¡û
>W1710592788
FRCS01000005
Actinomycetota
Cryptosporangium aurantiacum [FRCS]
562027
561952
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK