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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291157 (36 seq.)
>C171064230
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
1207225
1207301
+
Ile
GAT
-
¡û
>C171064268
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2611863
2611939
+
Ile
GAT
-
¡û
>C171064298
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2954396
2954472
+
Ile
GAT
-
¡û
>C171064338
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
702365
702289
-
Ile
GAT
-
¡û
>C171064355
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
694941
694865
-
Ile
GAT
-
¡û
>C171109177
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
13051
13127
+
Ile
GAT
-
¡û
>C171109215
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1417689
1417765
+
Ile
GAT
-
¡û
>C171109245
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1760221
1760297
+
Ile
GAT
-
¡û
>C171109280
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4094917
4094841
-
Ile
GAT
-
¡û
>C171109297
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4087493
4087417
-
Ile
GAT
-
¡û
>WENV181560807
OGJC01008882
[OGJC] metagenome; Human gut stool
655
731
+
Ile
GAT
[ENA]
¢þ
>WENV181728066
OGQA01015252
[OGQA] human gut metagenome; faeces
2303
2227
-
Ile
GAT
[ENA]
¢þ
>WENV182310922
OHXP01000014
[OHXP] human gut metagenome; feces
967
1043
+
Ile
GAT
[ENA]
¢þ
>WENV182311032
OHXQ01000546
[OHXQ] human gut metagenome; feces
4003
3927
-
Ile
GAT
[ENA]
¢þ
>WENV182347203
OIAW01000902
[OIAW] human gut metagenome; feces
1992
1916
-
Ile
GAT
[ENA]
¢þ
>WENV182372467
OICX01000100
[OICX] human gut metagenome; feces
955
879
-
Ile
GAT
[ENA]
¢þ
>WENV182377869
OIDI01002116
[OIDI] human gut metagenome; feces
775
851
+
Ile
GAT
[ENA]
¢þ
>WENV182378051
OIDJ01001305
[OIDJ] human gut metagenome; feces
2151
2075
-
Ile
GAT
[ENA]
¢þ
>WENV182638932
OJLA01030621
[OJLA] metagenome; faeces
51
127
+
Ile
GAT
[ENA]
¢þ
>WENV183040109
OLGB01043688
[OLGB] human gut metagenome; faeces
821
745
-
Ile
GAT
[ENA]
¢þ
>WENV183434715
OMBZ01038790
[OMBZ] human gut metagenome; feces
349
425
+
Ile
GAT
[ENA]
¢þ
>WENV183453968
OMDE01027926
[OMDE] human gut metagenome; feces
433
357
-
Ile
GAT
[ENA]
¢þ
>WENV183474400
OMET01034583
[OMET] human gut metagenome; feces
445
369
-
Ile
GAT
[ENA]
¢þ
>WENV183479580
OMFG01003629
[OMFG] human gut metagenome; feces
94
18
-
Ile
GAT
[ENA]
¢þ
>WENV170026389
CDTW01037856
[CDTW] gut metagenome; human stools
3524
3448
-
Ile
GAT
[ENA]
¢þ
>WENV170053121
CDZD01007205
[CDZD] gut metagenome; human stools
3524
3448
-
Ile
GAT
[ENA]
¢þ
>WENV170056140
CDZF01038133
[CDZF] gut metagenome; human stools
3397
3321
-
Ile
GAT
[ENA]
¢þ
>WENV170674782
LCWY01003320
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
1074
1150
+
Ile
GAT
[ENA]
¢þ
>WENV170675154
LCWZ01009875
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
369
293
-
Ile
GAT
[ENA]
¢þ
>WENV170675226
LCWZ01018657
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
208
284
+
Ile
GAT
[ENA]
¢þ
>W1910548241
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
175090
175014
-
Ile
GAT
[ENA]
¡û
>W1910548283
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
1570
1646
+
Ile
GAT
[ENA]
¡û
>C151057265
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1598558
1598634
+
Ile
GAT
[Ensembl]
¡û
>W1511527536
JYHU01000004
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
267719
267795
+
Ile
GAT
[ENA]
¡û
>W1710506711
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
242
166
-
Ile
GAT
[ENA]
¡û
>W1710553643
FOHU01000001
Bacillota
Natronincola peptidivorans [FOHU]
517941
517865
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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