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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291165 (31 seq.)
>W131087196
AOCI01000308
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
3110
3185
+
Pro
CGG
[ENA]
¡û
>C171112085
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
1860487
1860412
-
Pro
CGG
-
¡û
>WENV180204137
OBAH01000034
[OBAH] human gut metagenome; human gut
127756
127680
-
Pro
CGG
[ENA]
¢þ
>WENV180206092
OBAI01000033
[OBAI] human gut metagenome; human gut
127761
127685
-
Pro
CGG
[ENA]
¢þ
>WENV180298415
OBJA01327607
[OBJA] soil metagenome; sediment, water from around vicinity
172
247
+
Pro
CGG
[ENA]
¢þ
>WENV180339144
OBLI01002455
[OBLI] pig gut metagenome; faeces
15302
15227
-
Pro
CGG
[ENA]
¢þ
>WENV180545804
OCIU01000100
[OCIU] human gut metagenome; human gut
42355
42431
+
Pro
CGG
[ENA]
¢þ
>WENV180684865
OCVV012863233
[OCVV] gut metagenome; gut
1587
1512
-
Pro
CGG
[ENA]
¢þ
>WENV180684866
OCVV012863233
[OCVV] gut metagenome; gut
1587
1512
-
Pro
CGG
[ENA]
¢þ
>WENV180818090
ODJQ01007859
[ODJQ] human metagenome; G_DNA_Stool
4083
4007
-
Pro
CGG
[ENA]
¢þ
>WENV180849352
ODKV01000320
[ODKV] human metagenome; G_DNA_Stool
32786
32711
-
Pro
CGG
[ENA]
¢þ
>WENV180972032
ODUU01183729
[ODUU] human metagenome; G_DNA_Stool
264
340
+
Pro
CGG
[ENA]
¢þ
>WENV181238051
OFFB01007089
[OFFB] mouse gut metagenome; faeces
915
839
-
Pro
CGG
[ENA]
¢þ
>WENV181477204
OGFF01001011
[OGFF] metagenome; Human gut stool
6291
6367
+
Pro
CGG
[ENA]
¢þ
>W08008954
ABLR01000016
Cyanobacteriota
Rippkaea orientalis PCC 8801 [ABLR]
62863
62936
+
Pro
CGG
[ENA]
¡û
>W08011362
ABVE01000008
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
68799
68726
-
Pro
CGG
[ENA]
¡û
>WENV182299872
OHWL01010314
[OHWL] human gut metagenome; feces
1118
1191
+
Pro
CGG
[ENA]
¢þ
>WENV182312441
OHXW01006983
[OHXW] human gut metagenome; feces
1656
1732
+
Pro
CGG
[ENA]
¢þ
>WENV183389996
OLZB01003489
[OLZB] human gut metagenome; feces
2361
2285
-
Pro
CGG
[ENA]
¢þ
>WENV183420339
OMBA01001779
[OMBA] human gut metagenome; feces
1917
1993
+
Pro
CGG
[ENA]
¢þ
>WENV183488002
OMFY01001771
[OMFY] human gut metagenome; feces
1890
1966
+
Pro
CGG
[ENA]
¢þ
>WENV183652944
OQVZ01001012
[OQVZ] human gut metagenome; human gut
7292
7367
+
Pro
CGG
[ENA]
¢þ
>WENV170066996
CDZN01023070
[CDZN] gut metagenome; human stools
5614
5690
+
Pro
CGG
[ENA]
¢þ
>WENV170072514
CDZR01039459
[CDZR] gut metagenome; human stools
97622
97698
+
Pro
CGG
[ENA]
¢þ
>W1910018055
BDQK01000003
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
111632
111559
-
Pro
CGG
[ENA]
¡û
>W1910018122
BDQL01000090
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
22738
22665
-
Pro
CGG
[ENA]
¡û
>W1910502544
FYBH01000394
Cyanobacteriota
Calothrix rhizosoleniae SC01 [FYBH]
1069
1142
+
Pro
CGG
[ENA]
¡û
>C09103634
CP001287
Cyanobacteriota
Rippkaea orientalis PCC 8801 [CP001287]
3104720
3104647
-
Pro
CGG
[Ensembl]
¡û
>C10104713
CP001701
Cyanobacteriota
Rippkaea orientalis [CP001701]
3192071
3192144
+
Pro
CGG
[Ensembl]
¡û
>C11106723
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
4461568
4461641
+
Pro
CGG
[Ensembl]
¡û
>C11106767
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
4461568
4461641
+
Pro
CGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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