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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291440 (102 seq.)
>W1711319094
MAZB01000137
Gammaproteobacteria
Candidatus Erwinia dacicola [MAZB]
592
517
-
Val
TAC
[ENA]
¡û
>C009172
CP000653
Gammaproteobacteria
Enterobacter sp. 638 [CP000653]
1366189
1366264
+
Val
TAC
[Ensembl]
¡û
>C009185
CP000653
Gammaproteobacteria
Enterobacter sp. 638 [CP000653]
3183575
3183650
+
Val
TAC
[Ensembl]
¡û
>C009187
CP000653
Gammaproteobacteria
Enterobacter sp. 638 [CP000653]
3183807
3183882
+
Val
TAC
[Ensembl]
¡û
>WENV181228905
OFEI01000376
[OFEI] insect metagenome; insect
2987
3062
+
Val
TAC
[ENA]
¢þ
>WENV181232062
OFEL01000965
[OFEL] insect metagenome; insect
502
427
-
Val
TAC
[ENA]
¢þ
>W09106420
AAVF01000022
Gammaproteobacteria
Enterobacter sp. 638 [AAVF]
45976
46051
+
Val
TAC
[ENA]
¡û
>W09106428
AAVF01000032
Gammaproteobacteria
Enterobacter sp. 638 [AAVF]
9407
9332
-
Val
TAC
[ENA]
¡û
>C181083755
CP023529
Gammaproteobacteria
Lelliottia amnigena FDAARGOS_395 [CP023529]
283511
283586
+
Val
TAC
-
¡û
>C181083768
CP023529
Gammaproteobacteria
Lelliottia amnigena FDAARGOS_395 [CP023529]
2102499
2102574
+
Val
TAC
-
¡û
>C181083770
CP023529
Gammaproteobacteria
Lelliottia amnigena FDAARGOS_395 [CP023529]
2102731
2102806
+
Val
TAC
-
¡û
>C181084864
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
2649415
2649490
+
Val
TAC
-
¡û
>C181166489
CP028520
Gammaproteobacteria
Lelliottia sp. WB101 [CP028520]
4141319
4141244
-
Val
TAC
-
¡û
>C181166501
CP028520
Gammaproteobacteria
Lelliottia sp. WB101 [CP028520]
2396566
2396491
-
Val
TAC
-
¡û
>C181166503
CP028520
Gammaproteobacteria
Lelliottia sp. WB101 [CP028520]
2396339
2396264
-
Val
TAC
-
¡û
>C181175873
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
1115730
1115655
-
Val
TAC
-
¡û
>C181175874
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
1115614
1115539
-
Val
TAC
-
¡û
>C191100135
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
4591006
4591081
+
Val
TAC
-
¡û
>C191100143
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
4410517
4410442
-
Val
TAC
-
¡û
>C191100144
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
4410380
4410305
-
Val
TAC
-
¡û
>C191100145
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
4410271
4410196
-
Val
TAC
-
¡û
>C191130370
CP034752
Gammaproteobacteria
Jinshanibacter zhutongyuii CF-458 [CP034752]
3791152
3791227
+
Val
TAC
-
¡û
>C191130371
CP034752
Gammaproteobacteria
Jinshanibacter zhutongyuii CF-458 [CP034752]
3791288
3791363
+
Val
TAC
-
¡û
>C191130372
CP034752
Gammaproteobacteria
Jinshanibacter zhutongyuii CF-458 [CP034752]
3791414
3791489
+
Val
TAC
-
¡û
>C191196120
LR134135
Gammaproteobacteria
Lelliottia amnigena NCTC12124 [LR134135]
1265283
1265358
+
Val
TAC
-
¡û
>C191196133
LR134135
Gammaproteobacteria
Lelliottia amnigena NCTC12124 [LR134135]
3084483
3084558
+
Val
TAC
-
¡û
>C191196135
LR134135
Gammaproteobacteria
Lelliottia amnigena NCTC12124 [LR134135]
3084715
3084790
+
Val
TAC
-
¡û
>C191199699
LR134201
Gammaproteobacteria
Cedecea lapagei NCTC11466 [LR134201]
1204446
1204371
-
Val
TAC
-
¡û
>C191199700
LR134201
Gammaproteobacteria
Cedecea lapagei NCTC11466 [LR134201]
1204337
1204262
-
Val
TAC
-
¡û
>C191214343
LR134531
Gammaproteobacteria
Pragia fontium NCTC12284 [LR134531]
2837043
2837118
+
Val
TAC
-
¡û
>C191214344
LR134531
Gammaproteobacteria
Pragia fontium NCTC12284 [LR134531]
2837157
2837232
+
Val
TAC
-
¡û
>C191214345
LR134531
Gammaproteobacteria
Pragia fontium NCTC12284 [LR134531]
2837270
2837345
+
Val
TAC
-
¡û
>C191219771
LR217713
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCicurvipes [LR217713]
903108
903033
-
Val
TAC
-
¡û
>C191219914
LR217730
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCipseudotsugae [LR217730]
882965
882890
-
Val
TAC
-
¡û
>W141710380
JMPI01000047
Gammaproteobacteria
Buttiauxella agrestis ATCC 33320 [JMPI]
62274
62349
+
Val
TAC
[ENA]
¡û
>W141710381
JMPI01000047
Gammaproteobacteria
Buttiauxella agrestis ATCC 33320 [JMPI]
62411
62486
+
Val
TAC
[ENA]
¡û
>W141710399
JMPI01000083
Gammaproteobacteria
Buttiauxella agrestis ATCC 33320 [JMPI]
430
505
+
Val
TAC
[ENA]
¡û
>W141809826
JPRU01000002
Gammaproteobacteria
Buttiauxella noackiae agrestis [JPRU]
1157505
1157580
+
Val
TAC
[ENA]
¡û
>W141809827
JPRU01000002
Gammaproteobacteria
Buttiauxella noackiae agrestis [JPRU]
1157624
1157699
+
Val
TAC
[ENA]
¡û
>W141809828
JPRU01000002
Gammaproteobacteria
Buttiauxella noackiae agrestis [JPRU]
1157733
1157808
+
Val
TAC
[ENA]
¡û
>W141809841
JPRU01000002
Gammaproteobacteria
Buttiauxella noackiae agrestis [JPRU]
999520
999445
-
Val
TAC
[ENA]
¡û
>W1910179103
BJFN01000001
Gammaproteobacteria
Buttiauxella sp. A111 [BJFN]
1188807
1188882
+
Val
TAC
[ENA]
¡û
>W1910179104
BJFN01000001
Gammaproteobacteria
Buttiauxella sp. A111 [BJFN]
1188926
1189001
+
Val
TAC
[ENA]
¡û
>W1910179105
BJFN01000001
Gammaproteobacteria
Buttiauxella sp. A111 [BJFN]
1189035
1189110
+
Val
TAC
[ENA]
¡û
>W1910179112
BJFN01000001
Gammaproteobacteria
Buttiauxella sp. A111 [BJFN]
1008937
1008862
-
Val
TAC
[ENA]
¡û
>W1910230317
FOLW01000007
Gammaproteobacteria
Pragia fontium DSM 5563 = ATCC 49100 [FOLW]
35694
35769
+
Val
TAC
[ENA]
¡û
>W1910230318
FOLW01000007
Gammaproteobacteria
Pragia fontium DSM 5563 = ATCC 49100 [FOLW]
35808
35883
+
Val
TAC
[ENA]
¡û
>W1911573077
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
5010305
5010380
+
Val
TAC
[ENA]
¡û
>W1911573078
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
5010437
5010512
+
Val
TAC
[ENA]
¡û
>W1911573079
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
5010556
5010631
+
Val
TAC
[ENA]
¡û
>W1810053204
PDDA01000015
Gammaproteobacteria
Lelliottia amnigena LMG 2784 [PDDA]
140070
139995
-
Val
TAC
[ENA]
¡û
>W1810053206
PDDA01000015
Gammaproteobacteria
Lelliottia amnigena LMG 2784 [PDDA]
139838
139763
-
Val
TAC
[ENA]
¡û
>W1810053213
PDDA01000017
Gammaproteobacteria
Lelliottia amnigena LMG 2784 [PDDA]
112223
112298
+
Val
TAC
[ENA]
¡û
>W1810058720
PDKR01000001
Gammaproteobacteria
Candidatus Pantoea edessiphila SoEO [PDKR]
284170
284245
+
Val
TAC
[ENA]
¡û
>W1810147335
PIQM01000002
Gammaproteobacteria
Cedecea lapagei SLM1 [PIQM]
3040572
3040497
-
Val
TAC
[ENA]
¡û
>W1810147337
PIQM01000002
Gammaproteobacteria
Cedecea lapagei SLM1 [PIQM]
3040345
3040270
-
Val
TAC
[ENA]
¡û
>W1810147361
PIQM01000002
Gammaproteobacteria
Cedecea lapagei SLM1 [PIQM]
248496
248421
-
Val
TAC
[ENA]
¡û
>W1810185320
PKFT01000001
Gammaproteobacteria
Lelliottia sp. F153 [PKFT]
153428
153353
-
Val
TAC
[ENA]
¡û
>W1810185322
PKFT01000001
Gammaproteobacteria
Lelliottia sp. F153 [PKFT]
153201
153126
-
Val
TAC
[ENA]
¡û
>W1810185353
PKFT01000006
Gammaproteobacteria
Lelliottia sp. F153 [PKFT]
15492
15567
+
Val
TAC
[ENA]
¡û
>W1810266240
PQVR01000005
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
253544
253469
-
Val
TAC
[ENA]
¡û
>W1810266255
PQVR01000009
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
172505
172430
-
Val
TAC
[ENA]
¡û
>W1810266256
PQVR01000009
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
172386
172311
-
Val
TAC
[ENA]
¡û
>W1810266257
PQVR01000009
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
172277
172202
-
Val
TAC
[ENA]
¡û
>W1810266387
PQVT01000003
Gammaproteobacteria
Lelliottia aquatilis 6334-17 [PQVT]
307498
307423
-
Val
TAC
[ENA]
¡û
>W1810266405
PQVT01000010
Gammaproteobacteria
Lelliottia aquatilis 6334-17 [PQVT]
46523
46598
+
Val
TAC
[ENA]
¡û
>W1810266406
PQVT01000010
Gammaproteobacteria
Lelliottia aquatilis 6334-17 [PQVT]
46642
46717
+
Val
TAC
[ENA]
¡û
>W1810266407
PQVT01000010
Gammaproteobacteria
Lelliottia aquatilis 6334-17 [PQVT]
46751
46826
+
Val
TAC
[ENA]
¡û
>W1810266457
PQVU01000001
Gammaproteobacteria
Lelliottia aquatilis 6333-17 [PQVU]
679455
679380
-
Val
TAC
[ENA]
¡û
>W1810266488
PQVU01000010
Gammaproteobacteria
Lelliottia aquatilis 6333-17 [PQVU]
33459
33534
+
Val
TAC
[ENA]
¡û
>W1810266489
PQVU01000010
Gammaproteobacteria
Lelliottia aquatilis 6333-17 [PQVU]
33578
33653
+
Val
TAC
[ENA]
¡û
>W1810266490
PQVU01000010
Gammaproteobacteria
Lelliottia aquatilis 6333-17 [PQVU]
33687
33762
+
Val
TAC
[ENA]
¡û
>W1810266536
PQVV01000001
Gammaproteobacteria
Lelliottia aquatilis 6332-17 [PQVV]
679635
679560
-
Val
TAC
[ENA]
¡û
>W1810266572
PQVV01000011
Gammaproteobacteria
Lelliottia aquatilis 6332-17 [PQVV]
114198
114123
-
Val
TAC
[ENA]
¡û
>W1810266573
PQVV01000011
Gammaproteobacteria
Lelliottia aquatilis 6332-17 [PQVV]
114079
114004
-
Val
TAC
[ENA]
¡û
>W1810266574
PQVV01000011
Gammaproteobacteria
Lelliottia aquatilis 6332-17 [PQVV]
113970
113895
-
Val
TAC
[ENA]
¡û
>C151051721
CP009458
Gammaproteobacteria
Cedecea neteri M006 [CP009458]
4700986
4701061
+
Val
TAC
[Ensembl]
¡û
>C11108959
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
3824044
3824119
+
Val
TAC
[Ensembl]
¡û
>W1511346579
JRHG01000080
Gammaproteobacteria
Cedecea neteri SSMD04 [JRHG]
167
92
-
Val
TAC
[ENA]
¡û
>W1511545655
JZKP01000061
Gammaproteobacteria
Enterobacter asburiae CIDEIMsCOL5 [JZKP]
20332
20407
+
Val
TAC
[ENA]
¡û
>C121002389
CP002295
Gammaproteobacteria
Serratia symbiotica str. 'Cinara cedri' [CP002295]
644728
644656
-
Val
TAC
[Ensembl]
¡û
>W1610062406
BCNN01000002
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
679880
679805
-
Val
TAC
[ENA]
¡û
>W1610062415
BCNN01000005
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
257902
257977
+
Val
TAC
[ENA]
¡û
>W1610062417
BCNN01000005
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
258134
258209
+
Val
TAC
[ENA]
¡û
>W1610994322
LXEO01000027
Gammaproteobacteria
Buttiauxella noackiae ATCC 51607 [LXEO]
4985
4910
-
Val
TAC
[ENA]
¡û
>W1610994327
LXEO01000030
Gammaproteobacteria
Buttiauxella noackiae ATCC 51607 [LXEO]
1727
1802
+
Val
TAC
[ENA]
¡û
>W1610994328
LXEO01000030
Gammaproteobacteria
Buttiauxella noackiae ATCC 51607 [LXEO]
1846
1921
+
Val
TAC
[ENA]
¡û
>W1610994329
LXEO01000030
Gammaproteobacteria
Buttiauxella noackiae ATCC 51607 [LXEO]
1955
2030
+
Val
TAC
[ENA]
¡û
>W1610994380
LXEP01000007
Gammaproteobacteria
Buttiauxella gaviniae ATCC 51604 [LXEP]
68056
67981
-
Val
TAC
[ENA]
¡û
>W1610994382
LXEP01000008
Gammaproteobacteria
Buttiauxella gaviniae ATCC 51604 [LXEP]
35926
36001
+
Val
TAC
[ENA]
¡û
>W1610994383
LXEP01000008
Gammaproteobacteria
Buttiauxella gaviniae ATCC 51604 [LXEP]
36045
36120
+
Val
TAC
[ENA]
¡û
>W1610994384
LXEP01000008
Gammaproteobacteria
Buttiauxella gaviniae ATCC 51604 [LXEP]
36154
36229
+
Val
TAC
[ENA]
¡û
>W1610994474
LXEQ01000035
Gammaproteobacteria
Buttiauxella ferragutiae ATCC 51602 [LXEQ]
130
55
-
Val
TAC
[ENA]
¡û
>W1610994478
LXEQ01000038
Gammaproteobacteria
Buttiauxella ferragutiae ATCC 51602 [LXEQ]
85760
85835
+
Val
TAC
[ENA]
¡û
>W1610994539
LXER01000020
Gammaproteobacteria
Buttiauxella brennerae ATCC 51605 [LXER]
113716
113641
-
Val
TAC
[ENA]
¡û
>W1610994541
LXER01000022
Gammaproteobacteria
Buttiauxella brennerae ATCC 51605 [LXER]
32235
32310
+
Val
TAC
[ENA]
¡û
>W1610994542
LXER01000022
Gammaproteobacteria
Buttiauxella brennerae ATCC 51605 [LXER]
32354
32429
+
Val
TAC
[ENA]
¡û
>W1610994543
LXER01000022
Gammaproteobacteria
Buttiauxella brennerae ATCC 51605 [LXER]
32463
32538
+
Val
TAC
[ENA]
¡û
>W1611062367
MAZB01000137
Gammaproteobacteria
Candidatus Erwinia dacicola [MAZB]
592
517
-
Val
TAC
[ENA]
¡û
>W1710059947
BCNN01000002
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
679880
679805
-
Val
TAC
[ENA]
¡û
>W1710059956
BCNN01000005
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
257902
257977
+
Val
TAC
[ENA]
¡û
>W1710059958
BCNN01000005
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
258134
258209
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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