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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291486 (59 seq.)
>W141242095
CAHY01000020
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
43068
43144
+
Arg
CCG
[ENA]
¡û
>WENV182542026
OJAV01000424
[OJAV] seawater metagenome; Sea water
10348
10424
+
Arg
CCG
[ENA]
¢þ
>WENV182542376
OJAY01000257
[OJAY] seawater metagenome; Sea water
10963
11039
+
Arg
CCG
[ENA]
¢þ
>WENV182542639
OJAZ01000200
[OJAZ] seawater metagenome; Sea water
14623
14699
+
Arg
CCG
[ENA]
¢þ
>WENV182543403
OJBB01000045
[OJBB] seawater metagenome; Sea water
43306
43382
+
Arg
CCG
[ENA]
¢þ
>WENV182543631
OJBC01000012
[OJBC] seawater metagenome; Sea water
13589
13665
+
Arg
CCG
[ENA]
¢þ
>WENV182544171
OJBE01003113
[OJBE] seawater metagenome; Sea water
193
117
-
Arg
CCG
[ENA]
¢þ
>WENV182547101
OJBR01001014
[OJBR] seawater metagenome; Sea water
8366
8290
-
Arg
CCG
[ENA]
¢þ
>WENV182550057
OJBZ01002168
[OJBZ] seawater metagenome; Sea water
3549
3473
-
Arg
CCG
[ENA]
¢þ
>WENV182552499
OJCK01000844
[OJCK] seawater metagenome; Sea water
4470
4546
+
Arg
CCG
[ENA]
¢þ
>WENV182553245
OJCR01000848
[OJCR] seawater metagenome; Sea water
10744
10820
+
Arg
CCG
[ENA]
¢þ
>WENV182554926
OJCY01000016
[OJCY] seawater metagenome; Sea water
38498
38422
-
Arg
CCG
[ENA]
¢þ
>WENV182555740
OJDD01000214
[OJDD] seawater metagenome; Sea water
9982
10058
+
Arg
CCG
[ENA]
¢þ
>WENV182557344
OJDI01010155
[OJDI] seawater metagenome; Sea water
1080
1156
+
Arg
CCG
[ENA]
¢þ
>WENV182558964
OJDN01025149
[OJDN] seawater metagenome; Sea water
137
61
-
Arg
CCG
[ENA]
¢þ
>WENV182562329
OJDZ01000910
[OJDZ] seawater metagenome; Sea water
10348
10424
+
Arg
CCG
[ENA]
¢þ
>WENV182565757
OJEH01041487
[OJEH] seawater metagenome; Sea water
439
515
+
Arg
CCG
[ENA]
¢þ
>WENV182566262
OJEJ01004260
[OJEJ] seawater metagenome; Sea water
993
1069
+
Arg
CCG
[ENA]
¢þ
>WENV182566704
OJEM01000438
[OJEM] seawater metagenome; Sea water
9007
8931
-
Arg
CCG
[ENA]
¢þ
>WENV182567664
OJEP01000024
[OJEP] seawater metagenome; Sea water
43321
43397
+
Arg
CCG
[ENA]
¢þ
>WENV182571088
OJFG01000332
[OJFG] seawater metagenome; Sea water
18187
18263
+
Arg
CCG
[ENA]
¢þ
>WENV182572156
OJFL01000608
[OJFL] seawater metagenome; Sea water
7138
7062
-
Arg
CCG
[ENA]
¢þ
>WENV182573348
OJFP01000908
[OJFP] seawater metagenome; Sea water
10348
10424
+
Arg
CCG
[ENA]
¢þ
>WENV182574877
OJFS01004760
[OJFS] seawater metagenome; Sea water
81
5
-
Arg
CCG
[ENA]
¢þ
>WENV182576377
OJFX01016162
[OJFX] seawater metagenome; Sea water
528
452
-
Arg
CCG
[ENA]
¢þ
>WENV182577037
OJGC01000825
[OJGC] seawater metagenome; Sea water
781
705
-
Arg
CCG
[ENA]
¢þ
>WENV182577771
OJGH01014819
[OJGH] seawater metagenome; Sea water
181
257
+
Arg
CCG
[ENA]
¢þ
>WENV182578464
OJGO01000071
[OJGO] seawater metagenome; Sea water
18783
18707
-
Arg
CCG
[ENA]
¢þ
>WENV182580273
OJGU01028254
[OJGU] seawater metagenome; Sea water
559
483
-
Arg
CCG
[ENA]
¢þ
>WENV182580902
OJGW01025543
[OJGW] seawater metagenome; Sea water
678
602
-
Arg
CCG
[ENA]
¢þ
>WENV182581383
OJGX01004191
[OJGX] seawater metagenome; Sea water
3549
3473
-
Arg
CCG
[ENA]
¢þ
>WENV182582811
OJHC01000294
[OJHC] seawater metagenome; Sea water
3540
3464
-
Arg
CCG
[ENA]
¢þ
>WENV182584422
OJHG01000208
[OJHG] seawater metagenome; Sea water
29136
29212
+
Arg
CCG
[ENA]
¢þ
>WENV182585739
OJHI01003566
[OJHI] seawater metagenome; Sea water
662
586
-
Arg
CCG
[ENA]
¢þ
>WENV182586384
OJHK01000172
[OJHK] seawater metagenome; Sea water
9052
8976
-
Arg
CCG
[ENA]
¢þ
>WENV182590957
OJIK01005951
[OJIK] seawater metagenome; Sea water
1864
1940
+
Arg
CCG
[ENA]
¢þ
>WENV182591841
OJIO01007369
[OJIO] seawater metagenome; Sea water
1436
1512
+
Arg
CCG
[ENA]
¢þ
>WENV182592658
OJIR01007872
[OJIR] seawater metagenome; Sea water
156
232
+
Arg
CCG
[ENA]
¢þ
>WENV183054883
OLGU01014833
[OLGU] seawater metagenome; Sea water
144
68
-
Arg
CCG
[ENA]
¢þ
>WENV183055306
OLGX01001937
[OLGX] seawater metagenome; Sea water
2794
2718
-
Arg
CCG
[ENA]
¢þ
>WENV183057256
OLHL01000052
[OLHL] seawater metagenome; Sea water
5746
5822
+
Arg
CCG
[ENA]
¢þ
>WENV183057837
OLHM01008593
[OLHM] seawater metagenome; Sea water
712
636
-
Arg
CCG
[ENA]
¢þ
>WENV183058043
OLHN01001498
[OLHN] seawater metagenome; Sea water
161
237
+
Arg
CCG
[ENA]
¢þ
>WENV183059751
OLHV01002190
[OLHV] seawater metagenome; Sea water
2511
2435
-
Arg
CCG
[ENA]
¢þ
>WENV183061007
OLHY01026015
[OLHY] seawater metagenome; Sea water
878
802
-
Arg
CCG
[ENA]
¢þ
>WENV170023901
BCQL01009232
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
604
528
-
Arg
CCG
[ENA]
¢þ
>WENV170264888
CERD01081215
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
258
182
-
Arg
CCG
[ENA]
¢þ
>WENV170298367
CESF01102260
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
513
589
+
Arg
CCG
[ENA]
¢þ
>WENV170933101
MDTG01215327
[MDTG] marine metagenome; seawater
31096
31020
-
Arg
CCG
[ENA]
¢þ
>C191217626
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
92753
92829
+
Arg
CCG
-
¡û
>W1911641214
PYHU01000013
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
164787
164711
-
Arg
CCG
[ENA]
¡û
>C11100852
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
4173393
4173317
-
Arg
CCG
[Ensembl]
¡û
>C161051412
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
4008934
4008858
-
Arg
CCG
[Ensembl]
¡û
>C161062047
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
82569
82645
+
Arg
CCG
-
¡û
>C161062220
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
81777
81853
+
Arg
CCG
-
¡û
>C161062277
CP013933
Gammaproteobacteria
Alteromonas sp. Mac2 [CP013933]
83414
83490
+
Arg
CCG
-
¡û
>C161071036
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
82608
82684
+
Arg
CCG
-
¡û
>C161086286
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
1035683
1035607
-
Arg
CCG
-
¡û
>C161086292
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
2406716
2406792
+
Arg
CCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK