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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291494 (92 seq.)
>WENV180390599
OBPL01002227
[OBPL] marine metagenome; Sterivex filter
1905
1829
-
Pro
TGG
[ENA]
¢þ
>W141242101
CAHY01000044
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
101864
101940
+
Pro
TGG
[ENA]
¡û
>W141242105
CAHY01000044
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
102375
102451
+
Pro
TGG
[ENA]
¡û
>WENV182540190
OJAE01001801
[OJAE] seawater metagenome; Sea water
31
107
+
Pro
TGG
[ENA]
¢þ
>WENV182540680
OJAO01004786
[OJAO] seawater metagenome; Sea water
101
177
+
Pro
TGG
[ENA]
¢þ
>WENV182541993
OJAV01000206
[OJAV] seawater metagenome; Sea water
26293
26217
-
Pro
TGG
[ENA]
¢þ
>WENV182542412
OJAY01000675
[OJAY] seawater metagenome; Sea water
427
351
-
Pro
TGG
[ENA]
¢þ
>WENV182542680
OJAZ01000615
[OJAZ] seawater metagenome; Sea water
2659
2735
+
Pro
TGG
[ENA]
¢þ
>WENV182542684
OJAZ01000615
[OJAZ] seawater metagenome; Sea water
3181
3257
+
Pro
TGG
[ENA]
¢þ
>WENV182543388
OJBB01000008
[OJBB] seawater metagenome; Sea water
95289
95213
-
Pro
TGG
[ENA]
¢þ
>WENV182543695
OJBC01000342
[OJBC] seawater metagenome; Sea water
670
594
-
Pro
TGG
[ENA]
¢þ
>WENV182544157
OJBE01002622
[OJBE] seawater metagenome; Sea water
605
529
-
Pro
TGG
[ENA]
¢þ
>WENV182546912
OJBQ01002347
[OJBQ] seawater metagenome; Sea water
78
154
+
Pro
TGG
[ENA]
¢þ
>WENV182547110
OJBR01001189
[OJBR] seawater metagenome; Sea water
3114
3190
+
Pro
TGG
[ENA]
¢þ
>WENV182548800
OJBX01000186
[OJBX] seawater metagenome; Sea water
254
178
-
Pro
TGG
[ENA]
¢þ
>WENV182549739
OJBY01023799
[OJBY] seawater metagenome; Sea water
472
396
-
Pro
TGG
[ENA]
¢þ
>WENV182549943
OJBZ01000697
[OJBZ] seawater metagenome; Sea water
3123
3047
-
Pro
TGG
[ENA]
¢þ
>WENV182549947
OJBZ01000697
[OJBZ] seawater metagenome; Sea water
2601
2525
-
Pro
TGG
[ENA]
¢þ
>WENV182551639
OJCF01001139
[OJCF] seawater metagenome; Sea water
126
202
+
Pro
TGG
[ENA]
¢þ
>WENV182552489
OJCK01000491
[OJCK] seawater metagenome; Sea water
4334
4410
+
Pro
TGG
[ENA]
¢þ
>WENV182553465
OJCR01006183
[OJCR] seawater metagenome; Sea water
1320
1396
+
Pro
TGG
[ENA]
¢þ
>WENV182554691
OJCW01001520
[OJCW] seawater metagenome; Sea water
3868
3944
+
Pro
TGG
[ENA]
¢þ
>WENV182554952
OJCY01000137
[OJCY] seawater metagenome; Sea water
20016
20092
+
Pro
TGG
[ENA]
¢þ
>WENV182554956
OJCY01000137
[OJCY] seawater metagenome; Sea water
20538
20614
+
Pro
TGG
[ENA]
¢þ
>WENV182555754
OJDD01000373
[OJDD] seawater metagenome; Sea water
9156
9080
-
Pro
TGG
[ENA]
¢þ
>WENV182559322
OJDO01016814
[OJDO] seawater metagenome; Sea water
435
511
+
Pro
TGG
[ENA]
¢þ
>WENV182559774
OJDQ01003942
[OJDQ] seawater metagenome; Sea water
2930
2854
-
Pro
TGG
[ENA]
¢þ
>WENV182562210
OJDZ01000089
[OJDZ] seawater metagenome; Sea water
9350
9426
+
Pro
TGG
[ENA]
¢þ
>WENV182562214
OJDZ01000089
[OJDZ] seawater metagenome; Sea water
9872
9948
+
Pro
TGG
[ENA]
¢þ
>WENV182565747
OJEH01039675
[OJEH] seawater metagenome; Sea water
534
458
-
Pro
TGG
[ENA]
¢þ
>WENV182566193
OJEJ01000647
[OJEJ] seawater metagenome; Sea water
2301
2225
-
Pro
TGG
[ENA]
¢þ
>WENV182566733
OJEM01001529
[OJEM] seawater metagenome; Sea water
1727
1651
-
Pro
TGG
[ENA]
¢þ
>WENV182568158
OJEQ01003630
[OJEQ] seawater metagenome; Sea water
575
499
-
Pro
TGG
[ENA]
¢þ
>WENV182568192
OJER01001109
[OJER] seawater metagenome; Sea water
1607
1531
-
Pro
TGG
[ENA]
¢þ
>WENV182570668
OJFE01001299
[OJFE] seawater metagenome; Sea water
1278
1202
-
Pro
TGG
[ENA]
¢þ
>WENV182571003
OJFG01000021
[OJFG] seawater metagenome; Sea water
112252
112328
+
Pro
TGG
[ENA]
¢þ
>WENV182572448
OJFL01008604
[OJFL] seawater metagenome; Sea water
3
79
+
Pro
TGG
[ENA]
¢þ
>WENV182573402
OJFP01001387
[OJFP] seawater metagenome; Sea water
2601
2525
-
Pro
TGG
[ENA]
¢þ
>WENV182574725
OJFS01000817
[OJFS] seawater metagenome; Sea water
416
492
+
Pro
TGG
[ENA]
¢þ
>WENV182574729
OJFS01000817
[OJFS] seawater metagenome; Sea water
938
1014
+
Pro
TGG
[ENA]
¢þ
>WENV182575888
OJFX01000111
[OJFX] seawater metagenome; Sea water
25078
25154
+
Pro
TGG
[ENA]
¢þ
>WENV182577092
OJGC01003827
[OJGC] seawater metagenome; Sea water
770
846
+
Pro
TGG
[ENA]
¢þ
>WENV182577684
OJGH01000902
[OJGH] seawater metagenome; Sea water
4755
4679
-
Pro
TGG
[ENA]
¢þ
>WENV182577882
OJGL01002541
[OJGL] seawater metagenome; Sea water
41
117
+
Pro
TGG
[ENA]
¢þ
>WENV182578443
OJGO01000013
[OJGO] seawater metagenome; Sea water
63968
64044
+
Pro
TGG
[ENA]
¢þ
>WENV182579523
OJGS01017305
[OJGS] seawater metagenome; Sea water
227
303
+
Pro
TGG
[ENA]
¢þ
>WENV182580799
OJGW01013903
[OJGW] seawater metagenome; Sea water
915
991
+
Pro
TGG
[ENA]
¢þ
>WENV182580803
OJGW01013903
[OJGW] seawater metagenome; Sea water
1437
1513
+
Pro
TGG
[ENA]
¢þ
>WENV182581052
OJGX01000015
[OJGX] seawater metagenome; Sea water
42069
41993
-
Pro
TGG
[ENA]
¢þ
>WENV182581056
OJGX01000015
[OJGX] seawater metagenome; Sea water
41547
41471
-
Pro
TGG
[ENA]
¢þ
>WENV182582777
OJHC01000060
[OJHC] seawater metagenome; Sea water
43490
43414
-
Pro
TGG
[ENA]
¢þ
>WENV182582781
OJHC01000060
[OJHC] seawater metagenome; Sea water
42968
42892
-
Pro
TGG
[ENA]
¢þ
>WENV182584514
OJHG01001053
[OJHG] seawater metagenome; Sea water
427
351
-
Pro
TGG
[ENA]
¢þ
>WENV182585762
OJHI01006166
[OJHI] seawater metagenome; Sea water
465
389
-
Pro
TGG
[ENA]
¢þ
>WENV182586140
OJHJ01003496
[OJHJ] seawater metagenome; Sea water
1640
1564
-
Pro
TGG
[ENA]
¢þ
>WENV182586426
OJHK01000322
[OJHK] seawater metagenome; Sea water
11130
11206
+
Pro
TGG
[ENA]
¢þ
>WENV182588220
OJHP01001887
[OJHP] seawater metagenome; Sea water
511
435
-
Pro
TGG
[ENA]
¢þ
>WENV182588256
OJHQ01000440
[OJHQ] seawater metagenome; Sea water
78
154
+
Pro
TGG
[ENA]
¢þ
>WENV182591716
OJIO01002693
[OJIO] seawater metagenome; Sea water
1309
1233
-
Pro
TGG
[ENA]
¢þ
>WENV182592453
OJIR01000851
[OJIR] seawater metagenome; Sea water
4549
4625
+
Pro
TGG
[ENA]
¢þ
>WENV182592457
OJIR01000851
[OJIR] seawater metagenome; Sea water
5071
5147
+
Pro
TGG
[ENA]
¢þ
>WENV182594485
OJIV01019077
[OJIV] seawater metagenome; Sea water
416
492
+
Pro
TGG
[ENA]
¢þ
>WENV183055366
OLGX01009901
[OLGX] seawater metagenome; Sea water
248
324
+
Pro
TGG
[ENA]
¢þ
>WENV183055406
OLHB01004503
[OLHB] seawater metagenome; Sea water
553
477
-
Pro
TGG
[ENA]
¢þ
>WENV183057563
OLHL01010049
[OLHL] seawater metagenome; Sea water
427
351
-
Pro
TGG
[ENA]
¢þ
>WENV183057819
OLHM01006959
[OLHM] seawater metagenome; Sea water
175
99
-
Pro
TGG
[ENA]
¢þ
>WENV183058031
OLHN01000956
[OLHN] seawater metagenome; Sea water
1332
1256
-
Pro
TGG
[ENA]
¢þ
>WENV183059763
OLHV01002670
[OLHV] seawater metagenome; Sea water
2209
2285
+
Pro
TGG
[ENA]
¢þ
>WENV183062387
OLID01006396
[OLID] seawater metagenome; Sea water
121
197
+
Pro
TGG
[ENA]
¢þ
>WENV170023904
BCQL01009334
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2163
2087
-
Pro
TGG
[ENA]
¢þ
>WENV170023908
BCQL01009334
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1652
1576
-
Pro
TGG
[ENA]
¢þ
>WENV170298421
CESF01116465
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
320
244
-
Pro
TGG
[ENA]
¢þ
>WENV170926446
MDTG01100084
[MDTG] marine metagenome; seawater
2616
2692
+
Pro
TGG
[ENA]
¢þ
>C191217666
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
3168638
3168562
-
Pro
TGG
-
¡û
>C191217670
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
3168140
3168064
-
Pro
TGG
-
¡û
>W1911641221
PYHU01000023
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
33710
33786
+
Pro
TGG
[ENA]
¡û
>W1911641225
PYHU01000023
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
34232
34308
+
Pro
TGG
[ENA]
¡û
>C11100828
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
946294
946370
+
Pro
TGG
[Ensembl]
¡û
>C11100832
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
946816
946892
+
Pro
TGG
[Ensembl]
¡û
>C161051389
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
973403
973479
+
Pro
TGG
[Ensembl]
¡û
>C161051393
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
973914
973990
+
Pro
TGG
[Ensembl]
¡û
>C161062066
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
3116321
3116245
-
Pro
TGG
-
¡û
>C161062070
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
3115810
3115734
-
Pro
TGG
-
¡û
>C161062243
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
3133258
3133182
-
Pro
TGG
-
¡û
>C161062247
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
3132747
3132671
-
Pro
TGG
-
¡û
>C161062287
CP013933
Gammaproteobacteria
Alteromonas sp. Mac2 [CP013933]
3108070
3107994
-
Pro
TGG
-
¡û
>C161071059
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
3160173
3160097
-
Pro
TGG
-
¡û
>C161071063
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
3159661
3159585
-
Pro
TGG
-
¡û
>C161086239
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
2723706
2723782
+
Pro
TGG
-
¡û
>C161086243
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
2724217
2724293
+
Pro
TGG
-
¡û
>C161086343
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
758971
758895
-
Pro
TGG
-
¡û
>C161086347
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
758459
758383
-
Pro
TGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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