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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291498 (55 seq.)
>W141242075
CAHY01000006
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
54019
53943
-
Val
GAC
[ENA]
¡û
>WENV182542726
OJAZ01001174
[OJAZ] seawater metagenome; Sea water
3831
3755
-
Val
GAC
[ENA]
¢þ
>WENV182543384
OJBB01000008
[OJBB] seawater metagenome; Sea water
143987
144063
+
Val
GAC
[ENA]
¢þ
>WENV182543704
OJBC01000451
[OJBC] seawater metagenome; Sea water
3297
3221
-
Val
GAC
[ENA]
¢þ
>WENV182544213
OJBE01008783
[OJBE] seawater metagenome; Sea water
735
659
-
Val
GAC
[ENA]
¢þ
>WENV182547033
OJBR01000224
[OJBR] seawater metagenome; Sea water
20235
20311
+
Val
GAC
[ENA]
¢þ
>WENV182549172
OJBX01033691
[OJBX] seawater metagenome; Sea water
100
176
+
Val
GAC
[ENA]
¢þ
>WENV182549927
OJBZ01000502
[OJBZ] seawater metagenome; Sea water
3833
3757
-
Val
GAC
[ENA]
¢þ
>WENV182552502
OJCK01000973
[OJCK] seawater metagenome; Sea water
642
566
-
Val
GAC
[ENA]
¢þ
>WENV182553268
OJCR01001058
[OJCR] seawater metagenome; Sea water
1831
1755
-
Val
GAC
[ENA]
¢þ
>WENV182554927
OJCY01000018
[OJCY] seawater metagenome; Sea water
17218
17294
+
Val
GAC
[ENA]
¢þ
>WENV182555743
OJDD01000252
[OJDD] seawater metagenome; Sea water
12655
12731
+
Val
GAC
[ENA]
¢þ
>WENV182557134
OJDI01001229
[OJDI] seawater metagenome; Sea water
3778
3702
-
Val
GAC
[ENA]
¢þ
>WENV182558261
OJDL01026443
[OJDL] seawater metagenome; Sea water
415
339
-
Val
GAC
[ENA]
¢þ
>WENV182558849
OJDN01006966
[OJDN] seawater metagenome; Sea water
1250
1326
+
Val
GAC
[ENA]
¢þ
>WENV182562312
OJDZ01000706
[OJDZ] seawater metagenome; Sea water
7850
7774
-
Val
GAC
[ENA]
¢þ
>WENV182566223
OJEJ01001535
[OJEJ] seawater metagenome; Sea water
143
219
+
Val
GAC
[ENA]
¢þ
>WENV182566784
OJEM01004099
[OJEM] seawater metagenome; Sea water
498
574
+
Val
GAC
[ENA]
¢þ
>WENV182567669
OJEP01000039
[OJEP] seawater metagenome; Sea water
26631
26707
+
Val
GAC
[ENA]
¢þ
>WENV182572048
OJFL01000159
[OJFL] seawater metagenome; Sea water
25494
25570
+
Val
GAC
[ENA]
¢þ
>WENV182573323
OJFP01000786
[OJFP] seawater metagenome; Sea water
8544
8620
+
Val
GAC
[ENA]
¢þ
>WENV182574746
OJFS01001036
[OJFS] seawater metagenome; Sea water
3833
3757
-
Val
GAC
[ENA]
¢þ
>WENV182575290
OJFU01003958
[OJFU] seawater metagenome; Sea water
1633
1557
-
Val
GAC
[ENA]
¢þ
>WENV182576219
OJFX01005722
[OJFX] seawater metagenome; Sea water
1290
1214
-
Val
GAC
[ENA]
¢þ
>WENV182577714
OJGH01002317
[OJGH] seawater metagenome; Sea water
2085
2161
+
Val
GAC
[ENA]
¢þ
>WENV182578468
OJGO01000085
[OJGO] seawater metagenome; Sea water
48587
48663
+
Val
GAC
[ENA]
¢þ
>WENV182579579
OJGS01026760
[OJGS] seawater metagenome; Sea water
662
738
+
Val
GAC
[ENA]
¢þ
>WENV182580245
OJGU01022934
[OJGU] seawater metagenome; Sea water
645
569
-
Val
GAC
[ENA]
¢þ
>WENV182580615
OJGW01004928
[OJGW] seawater metagenome; Sea water
619
695
+
Val
GAC
[ENA]
¢þ
>WENV182581172
OJGX01000466
[OJGX] seawater metagenome; Sea water
12034
12110
+
Val
GAC
[ENA]
¢þ
>WENV182582805
OJHC01000234
[OJHC] seawater metagenome; Sea water
9224
9300
+
Val
GAC
[ENA]
¢þ
>WENV182584380
OJHG01000082
[OJHG] seawater metagenome; Sea water
25439
25363
-
Val
GAC
[ENA]
¢þ
>WENV182585775
OJHI01008413
[OJHI] seawater metagenome; Sea water
957
881
-
Val
GAC
[ENA]
¢þ
>WENV182586376
OJHK01000157
[OJHK] seawater metagenome; Sea water
44169
44245
+
Val
GAC
[ENA]
¢þ
>WENV182590983
OJIK01007670
[OJIK] seawater metagenome; Sea water
1162
1238
+
Val
GAC
[ENA]
¢þ
>WENV182591882
OJIO01011373
[OJIO] seawater metagenome; Sea water
286
362
+
Val
GAC
[ENA]
¢þ
>WENV182592527
OJIR01002646
[OJIR] seawater metagenome; Sea water
4114
4190
+
Val
GAC
[ENA]
¢þ
>WENV182594422
OJIV01009849
[OJIV] seawater metagenome; Sea water
92
16
-
Val
GAC
[ENA]
¢þ
>WENV183054877
OLGU01013223
[OLGU] seawater metagenome; Sea water
931
855
-
Val
GAC
[ENA]
¢þ
>WENV183055396
OLHB01002929
[OLHB] seawater metagenome; Sea water
216
140
-
Val
GAC
[ENA]
¢þ
>WENV183057291
OLHL01000220
[OLHL] seawater metagenome; Sea water
22633
22557
-
Val
GAC
[ENA]
¢þ
>WENV183057851
OLHM01010833
[OLHM] seawater metagenome; Sea water
170
94
-
Val
GAC
[ENA]
¢þ
>WENV183058074
OLHN01002431
[OLHN] seawater metagenome; Sea water
437
361
-
Val
GAC
[ENA]
¢þ
>WENV170023982
BCQL01013133
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
594
518
-
Val
GAC
[ENA]
¢þ
>WENV170939863
MDTG01333318
[MDTG] marine metagenome; seawater
86
10
-
Val
GAC
[ENA]
¢þ
>C191217644
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
1715546
1715622
+
Val
GAC
-
¡û
>W1911641248
PYHU01000048
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
7831
7755
-
Val
GAC
[ENA]
¡û
>C11100870
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
2458017
2457941
-
Val
GAC
[Ensembl]
¡û
>C161051430
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
2336586
2336510
-
Val
GAC
[Ensembl]
¡û
>C161062086
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
1812689
1812613
-
Val
GAC
-
¡û
>C161062263
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
1855762
1855686
-
Val
GAC
-
¡û
>C161062297
CP013933
Gammaproteobacteria
Alteromonas sp. Mac2 [CP013933]
1835459
1835383
-
Val
GAC
-
¡û
>C161071079
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
1802839
1802763
-
Val
GAC
-
¡û
>C161086273
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
4110340
4110264
-
Val
GAC
-
¡û
>C161086310
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
4073969
4074045
+
Val
GAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK