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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291679 (40 seq.)
>W141242071
CAHY01000006
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
102475
102551
+
Met
CAT
[ENA]
¡û
>WENV182542728
OJAZ01001213
[OJAZ] seawater metagenome; Sea water
169
93
-
Met
CAT
[ENA]
¢þ
>WENV182543386
OJBB01000008
[OJBB] seawater metagenome; Sea water
95569
95493
-
Met
CAT
[ENA]
¢þ
>WENV182544196
OJBE01005267
[OJBE] seawater metagenome; Sea water
662
738
+
Met
CAT
[ENA]
¢þ
>WENV182549882
OJBZ01000223
[OJBZ] seawater metagenome; Sea water
30963
31039
+
Met
CAT
[ENA]
¢þ
>WENV182552496
OJCK01000672
[OJCK] seawater metagenome; Sea water
169
93
-
Met
CAT
[ENA]
¢þ
>WENV182554966
OJCY01000184
[OJCY] seawater metagenome; Sea water
17345
17421
+
Met
CAT
[ENA]
¢þ
>WENV182555819
OJDD01001377
[OJDD] seawater metagenome; Sea water
838
762
-
Met
CAT
[ENA]
¢þ
>WENV182557319
OJDI01006992
[OJDI] seawater metagenome; Sea water
1414
1490
+
Met
CAT
[ENA]
¢þ
>WENV182567789
OJEP01000243
[OJEP] seawater metagenome; Sea water
21625
21701
+
Met
CAT
[ENA]
¢þ
>WENV182572186
OJFL01000889
[OJFL] seawater metagenome; Sea water
12886
12962
+
Met
CAT
[ENA]
¢þ
>WENV182573428
OJFP01001721
[OJFP] seawater metagenome; Sea water
9294
9370
+
Met
CAT
[ENA]
¢þ
>WENV182574894
OJFS01005949
[OJFS] seawater metagenome; Sea water
169
93
-
Met
CAT
[ENA]
¢þ
>WENV182575383
OJFU01010549
[OJFU] seawater metagenome; Sea water
980
1056
+
Met
CAT
[ENA]
¢þ
>WENV182576341
OJFX01012383
[OJFX] seawater metagenome; Sea water
1655
1731
+
Met
CAT
[ENA]
¢þ
>WENV182577046
OJGC01001060
[OJGC] seawater metagenome; Sea water
2058
2134
+
Met
CAT
[ENA]
¢þ
>WENV182577675
OJGH01000560
[OJGH] seawater metagenome; Sea water
4587
4663
+
Met
CAT
[ENA]
¢þ
>WENV182578470
OJGO01000085
[OJGO] seawater metagenome; Sea water
169
93
-
Met
CAT
[ENA]
¢þ
>WENV182580889
OJGW01023776
[OJGW] seawater metagenome; Sea water
951
1027
+
Met
CAT
[ENA]
¢þ
>WENV182581348
OJGX01003471
[OJGX] seawater metagenome; Sea water
4903
4979
+
Met
CAT
[ENA]
¢þ
>WENV182582795
OJHC01000158
[OJHC] seawater metagenome; Sea water
22521
22597
+
Met
CAT
[ENA]
¢þ
>WENV182584316
OJHG01000005
[OJHG] seawater metagenome; Sea water
10659
10735
+
Met
CAT
[ENA]
¢þ
>WENV182586608
OJHK01001801
[OJHK] seawater metagenome; Sea water
170
94
-
Met
CAT
[ENA]
¢þ
>WENV182591086
OJIK01023671
[OJIK] seawater metagenome; Sea water
340
264
-
Met
CAT
[ENA]
¢þ
>WENV183057807
OLHM01006271
[OLHM] seawater metagenome; Sea water
1399
1323
-
Met
CAT
[ENA]
¢þ
>WENV183058106
OLHN01004719
[OLHN] seawater metagenome; Sea water
1496
1572
+
Met
CAT
[ENA]
¢þ
>WENV183061063
OLHY01037669
[OLHY] seawater metagenome; Sea water
243
167
-
Met
CAT
[ENA]
¢þ
>WENV170024217
BCQL01030969
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
738
662
-
Met
CAT
[ENA]
¢þ
>WENV170924226
MDTG01062336
[MDTG] marine metagenome; seawater
9165
9241
+
Met
CAT
[ENA]
¢þ
>C191217677
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
1667043
1666967
-
Met
CAT
-
¡û
>W1910180011
BJKL01000004
Gammaproteobacteria
Alteromonas sp. KUL49 [BJKL]
275295
275371
+
Met
CAT
[ENA]
¡û
>W1911641238
PYHU01000048
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
56299
56375
+
Met
CAT
[ENA]
¡û
>C11100839
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
2506503
2506579
+
Met
CAT
[Ensembl]
¡û
>C161051398
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
2385042
2385118
+
Met
CAT
[Ensembl]
¡û
>C161062053
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
1861145
1861221
+
Met
CAT
-
¡û
>C161062226
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
1904192
1904268
+
Met
CAT
-
¡û
>C161062281
CP013933
Gammaproteobacteria
Alteromonas sp. Mac2 [CP013933]
1883889
1883965
+
Met
CAT
-
¡û
>C161071042
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
1851254
1851330
+
Met
CAT
-
¡û
>C161086250
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
4158753
4158829
+
Met
CAT
-
¡û
>C161086323
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
4025554
4025478
-
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK