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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291869 (94 seq.)
>WENV011021
AACY020299766
Marine microbial communities from Global Ocean Sampling (GOS)
730
807
+
Ala
TGC
[ENA]
>WENV011343
AACY020309161
Marine microbial communities from Global Ocean Sampling (GOS)
689
766
+
Ala
TGC
[ENA]
>C171036917
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
1400755
1400680
-
Ala
TGC
-
¡û
>WENV180102696
OAOZ01006028
[OAOZ] marine metagenome; ENVO:00002010
295
222
-
Ala
TGC
[ENA]
¢þ
>WENV180103268
OAPA01011484
[OAPA] marine metagenome; ENVO:00002010
353
429
+
Ala
TGC
[ENA]
¢þ
>WENV180110859
OAPN01010398
[OAPN] marine metagenome; 2011
116
189
+
Ala
TGC
[ENA]
¢þ
>WENV180114573
OAPS01020429
[OAPS] marine metagenome; sea water
504
428
-
Ala
TGC
[ENA]
¢þ
>WENV180208936
OBAK01000237
[OBAK] marine metagenome; ENVO.00002150
2376
2449
+
Ala
TGC
[ENA]
¢þ
>WENV180209582
OBAL01005451
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1334
1258
-
Ala
TGC
[ENA]
¢þ
>WENV180356728
OBNL01013450
[OBNL] marine metagenome; ENVO:00002010
216
143
-
Ala
TGC
[ENA]
¢þ
>WENV180359517
OBNS01001012
[OBNS] marine metagenome; Seawater
345
271
-
Ala
TGC
[ENA]
¢þ
>WENV180360460
OBNU01000035
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
19848
19921
+
Ala
TGC
[ENA]
¢þ
>WENV180361780
OBNW01001092
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
1861
1934
+
Ala
TGC
[ENA]
¢þ
>WENV180364987
OBOB01001697
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
221
294
+
Ala
TGC
[ENA]
¢þ
>WENV180368074
OBOF01022150
[OBOF] marine metagenome; ENVO:00002010
333
406
+
Ala
TGC
[ENA]
¢þ
>WENV180376568
OBOM01028954
[OBOM] marine metagenome; Seawater
426
502
+
Ala
TGC
[ENA]
¢þ
>WENV180382019
OBOS01075389
[OBOS] marine metagenome; ENVO 00002150
347
270
-
Ala
TGC
[ENA]
¢þ
>WENV180391149
OBPM01019871
[OBPM] marine metagenome; ENVO:00002010
252
325
+
Ala
TGC
[ENA]
¢þ
>WENV180391882
OBPN01084693
[OBPN] marine metagenome; seawater
306
380
+
Ala
TGC
[ENA]
¢þ
>WENV180392759
OBPP01007951
[OBPP] marine metagenome; ENVO:00002042
318
391
+
Ala
TGC
[ENA]
¢þ
>WENV180393708
OBPR01002008
[OBPR] marine metagenome; ENVO:00002042
337
260
-
Ala
TGC
[ENA]
¢þ
>WENV180399133
OBQG01000921
[OBQG] marine metagenome; ENV:00002010
519
446
-
Ala
TGC
[ENA]
¢þ
>WENV180399264
OBQH01000029
[OBQH] marine metagenome; ENV:00002010
2748
2821
+
Ala
TGC
[ENA]
¢þ
>WENV180399484
OBQO01000003
[OBQO] marine metagenome; ENVO:00002010
60544
60617
+
Ala
TGC
[ENA]
¢þ
>WENV180591372
OCOV01015066
[OCOV] marine metagenome; ENVO:01000301
541
468
-
Ala
TGC
[ENA]
¢þ
>WENV180650310
OCSY01005566
[OCSY] marine metagenome; 30 L Plastic container
152
79
-
Ala
TGC
[ENA]
¢þ
>WENV181120681
OEFK01032524
[OEFK] marine metagenome; ENVO:00002010 seawater
99
175
+
Ala
TGC
[ENA]
¢þ
>WENV181320934
OFKJ01000481
[OFKJ] marine metagenome; sea ice
371
298
-
Ala
TGC
[ENA]
¢þ
>WENV181322033
OFKP01000819
[OFKP] marine metagenome; sea ice
1487
1560
+
Ala
TGC
[ENA]
¢þ
>WENV181323479
OFKY01000769
[OFKY] marine metagenome; sea ice
579
652
+
Ala
TGC
[ENA]
¢þ
>WENV181323923
OFKZ01032918
[OFKZ] marine metagenome; sea ice
5
78
+
Ala
TGC
[ENA]
¢þ
>WENV181324137
OFLC01000388
[OFLC] marine metagenome; melt pond
1082
1009
-
Ala
TGC
[ENA]
¢þ
>WENV181324420
OFLE01007309
[OFLE] marine metagenome; sea ice
198
271
+
Ala
TGC
[ENA]
¢þ
>WENV181324492
OFLF01000012
[OFLF] marine metagenome; melt pond
9584
9657
+
Ala
TGC
[ENA]
¢þ
>WENV181325861
OFLJ01036186
[OFLJ] seawater metagenome; seawater
361
434
+
Ala
TGC
[ENA]
¢þ
>WENV181367490
OFQB01003726
[OFQB] freshwater metagenome; Freshwater Lake
474
547
+
Ala
TGC
[ENA]
¢þ
>WENV181367753
OFQC01010554
[OFQC] freshwater metagenome; Freshwater Lake
348
421
+
Ala
TGC
[ENA]
¢þ
>WENV181369592
OFQP01010057
[OFQP] freshwater metagenome; Freshwater Lake
571
644
+
Ala
TGC
[ENA]
¢þ
>WENV181369952
OFQR01003130
[OFQR] freshwater metagenome; Freshwater Lake
1299
1372
+
Ala
TGC
[ENA]
¢þ
>WENV181370378
OFQS01006854
[OFQS] freshwater metagenome; Freshwater Lake
350
423
+
Ala
TGC
[ENA]
¢þ
>WENV181385793
OFRK01004844
[OFRK] marine metagenome; sea ice
713
640
-
Ala
TGC
[ENA]
¢þ
>WENV181839951
OGVO01026349
[OGVO] freshwater metagenome; freshwater
172
99
-
Ala
TGC
[ENA]
¢þ
>WENV181843416
OGVU01013783
[OGVU] freshwater metagenome; freshwater
734
807
+
Ala
TGC
[ENA]
¢þ
>WENV181856025
OGWM01012130
[OGWM] freshwater metagenome; freshwater
150
77
-
Ala
TGC
[ENA]
¢þ
>WENV019135
AACY020526420
Marine microbial communities from Global Ocean Sampling (GOS)
1224
1301
+
Ala
TGC
[ENA]
>WENV019527
AACY020533857
Marine microbial communities from Global Ocean Sampling (GOS)
1328
1405
+
Ala
TGC
[ENA]
>WENV183615610
OOEB01058057
[OOEB] marine metagenome; sea ice
421
348
-
Ala
TGC
[ENA]
¢þ
>WENV183617767
OOEG01092807
[OOEG] marine metagenome; sea ice
212
139
-
Ala
TGC
[ENA]
¢þ
>WENV183619715
OOFQ01037156
[OOFQ] marine metagenome; seawater
361
434
+
Ala
TGC
[ENA]
¢þ
>WENV183620914
OOFT01000019
[OOFT] marine metagenome; sea ice
29448
29375
-
Ala
TGC
[ENA]
¢þ
>WENV183621684
OOFU01030250
[OOFU] marine metagenome; sea ice
207
280
+
Ala
TGC
[ENA]
¢þ
>WENV183624637
OOGD01074239
[OOGD] marine metagenome; sea ice
250
323
+
Ala
TGC
[ENA]
¢þ
>WENV183625626
OOGG01004361
[OOGG] marine metagenome; sea ice
874
801
-
Ala
TGC
[ENA]
¢þ
>WENV183628769
OOGO01020943
[OOGO] marine metagenome; sea ice
330
257
-
Ala
TGC
[ENA]
¢þ
>WENV170567523
FLMP01001513
[FLMP] seawater metagenome; seawater
279
204
-
Ala
TGC
[ENA]
¢þ
>WENV170597930
FUWD010020036
[FUWD] metagenome; unknown
456
381
-
Ala
TGC
[ENA]
¢þ
>WENV170600574
FUWD010133295
[FUWD] metagenome; unknown
146
221
+
Ala
TGC
[ENA]
¢þ
>WENV170600578
FUWD010133383
[FUWD] metagenome; unknown
151
226
+
Ala
TGC
[ENA]
¢þ
>WENV170600811
FUWD010143590
[FUWD] metagenome; unknown
197
122
-
Ala
TGC
[ENA]
¢þ
>WENV170606578
FUWD010687282
[FUWD] metagenome; unknown
321
248
-
Ala
TGC
[ENA]
¢þ
>WENV170615539
FUWD012860461
[FUWD] metagenome; unknown
1339
1414
+
Ala
TGC
[ENA]
¢þ
>WENV170615541
FUWD012860462
[FUWD] metagenome; unknown
705
780
+
Ala
TGC
[ENA]
¢þ
>WENV170618653
FUWD012980062
[FUWD] metagenome; unknown
150
75
-
Ala
TGC
[ENA]
¢þ
>WENV170621897
FUWD013078136
[FUWD] metagenome; unknown
559
634
+
Ala
TGC
[ENA]
¢þ
>WENV170624068
FUWD013174594
[FUWD] metagenome; unknown
562
637
+
Ala
TGC
[ENA]
¢þ
>WENV170624140
FUWD013175575
[FUWD] metagenome; unknown
3380
3305
-
Ala
TGC
[ENA]
¢þ
>WENV170630093
FUWD013293505
[FUWD] metagenome; unknown
559
634
+
Ala
TGC
[ENA]
¢þ
>WENV170632355
FUWD013380923
[FUWD] metagenome; unknown
562
637
+
Ala
TGC
[ENA]
¢þ
>WENV170632422
FUWD013381715
[FUWD] metagenome; unknown
3380
3305
-
Ala
TGC
[ENA]
¢þ
>WENV170645652
JNSL01000179
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
123
198
+
Ala
TGC
[ENA]
¢þ
>WENV170949883
MEHZ011461820
[MEHZ] marine metagenome; marine surface water
3393
3318
-
Ala
TGC
[ENA]
¢þ
>C191178315
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
10220
10295
+
Ala
TGC
-
¡û
>C191178354
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
10218
10293
+
Ala
TGC
-
¡û
>C191178393
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
10241
10316
+
Ala
TGC
-
¡û
>C151025266
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
11551
11624
+
Ala
TGC
[Ensembl]
¡û
>SRA1023186
SRR035084.30991
454 Sequencing (SRP001805)
385
458
+
Ala
TGC
[SRA]
>SRA1024705
SRR035084.380461
454 Sequencing (SRP001805)
315
390
+
Ala
TGC
[SRA]
>SRA1025229
SRR035084.522539
454 Sequencing (SRP001805)
346
271
-
Ala
TGC
[SRA]
>WENV030139
AACY021258589
Marine microbial communities from Global Ocean Sampling (GOS)
335
258
-
Ala
TGC
[ENA]
>SRA1044430
SRR035092.278795
454 Sequencing (SRP001813)
67
142
+
Ala
TGC
[SRA]
>SRA1044821
SRR035092.352014
454 Sequencing (SRP001813)
68
143
+
Ala
TGC
[SRA]
>WENV050947
AACY022917545
Marine microbial communities from Global Ocean Sampling (GOS)
614
691
+
Ala
TGC
[ENA]
>WENV055878
AACY023242659
Marine microbial communities from Global Ocean Sampling (GOS)
282
205
-
Ala
TGC
[ENA]
>WENV057511
AACY023297121
Marine microbial communities from Global Ocean Sampling (GOS)
61
136
+
Ala
TGC
[ENA]
>W121063455
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
86124
86199
+
Ala
TGC
[ENA]
¡û
>WENV058946
AACY023348210
Marine microbial communities from Global Ocean Sampling (GOS)
508
431
-
Ala
TGC
[ENA]
>WENV070321
AACY023805243
Marine microbial communities from Global Ocean Sampling (GOS)
1073
996
-
Ala
TGC
[ENA]
>WENV070323
AACY023805264
Marine microbial communities from Global Ocean Sampling (GOS)
1441
1364
-
Ala
TGC
[ENA]
>WENV070730
AACY023820322
Marine microbial communities from Global Ocean Sampling (GOS)
775
698
-
Ala
TGC
[ENA]
>WENV071304
AACY023842624
Marine microbial communities from Global Ocean Sampling (GOS)
98
21
-
Ala
TGC
[ENA]
>WENV071391
AACY023845739
Marine microbial communities from Global Ocean Sampling (GOS)
103
180
+
Ala
TGC
[ENA]
>W1610597830
LFFJ01000011
Actinomycetota
Actinobacteria bacterium casp-actino10 [LFFJ]
26
101
+
Ala
TGC
[ENA]
¡û
>WENV074581
AACY023983967
Marine microbial communities from Global Ocean Sampling (GOS)
491
414
-
Ala
TGC
[ENA]
>W1710719077
LFFJ01000011
Actinomycetota
Actinobacteria bacterium casp-actino10 [LFFJ]
26
101
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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