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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292009 (23 seq.)
>W1711464449
MJKD01000004
Campylobacterota
Campylobacter sp. P0088 [MJKD]
176474
176399
-
Trp
CCA
[ENA]
¡û
>W1711465087
MJKU01000001
Campylobacterota
Campylobacter sp. P0209 [MJKU]
500221
500146
-
Trp
CCA
[ENA]
¡û
>W1711465395
MJLC01000001
Campylobacterota
Campylobacter sp. P148 [MJLC]
499090
499015
-
Trp
CCA
[ENA]
¡û
>WENV180116920
OARB01000056
[OARB] human gut metagenome; ENVO:feces
9196
9271
+
Trp
CCA
[ENA]
¢þ
>WENV180117881
OARM01000711
[OARM] human gut metagenome; ENVO:feces
1033
958
-
Trp
CCA
[ENA]
¢þ
>WENV180229168
OBCH01001224
[OBCH] human gut metagenome; human gut
1583
1658
+
Trp
CCA
[ENA]
¢þ
>WENV180287253
OBIK01005835
[OBIK] hydrothermal vent metagenome; sea water
678
753
+
Trp
CCA
[ENA]
¢þ
>WENV180400341
OBRH01013956
[OBRH] human gut metagenome; ENVO:feces
185
110
-
Trp
CCA
[ENA]
¢þ
>WENV180403205
OBRR01039449
[OBRR] human gut metagenome; ENVO:feces
17
92
+
Trp
CCA
[ENA]
¢þ
>WENV180562643
OCLB01035987
[OCLB] human gut metagenome; human gut
162
237
+
Trp
CCA
[ENA]
¢þ
>WENV183640759
OQVL01010055
[OQVL] human gut metagenome; human gut
4593
4518
-
Trp
CCA
[ENA]
¢þ
>WENV183647950
OQVS01004671
[OQVS] human gut metagenome; human gut
5997
6072
+
Trp
CCA
[ENA]
¢þ
>WENV183657646
OQWI01025368
[OQWI] human gut metagenome; human gut
669
744
+
Trp
CCA
[ENA]
¢þ
>WENV170658497
JTFP01124295
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
222
297
+
Trp
CCA
[ENA]
¢þ
>W141451046
JFAP01000004
Campylobacterota
Campylobacter corcagiensis CIT045 [JFAP]
206194
206119
-
Trp
CCA
[ENA]
¡û
>C191153578
CP037746
Campylobacterota
Campylobacter volucris 2014D-0083 [CP037746]
1150525
1150450
-
Trp
CCA
-
¡û
>C191211225
LR134471
Campylobacterota
Campylobacter insulaenigrae NCTC12927 [LR134471]
391323
391398
+
Trp
CCA
-
¡û
>W1911709030
QPGP01000034
Campylobacterota
Campylobacter novaezeelandiae W677a [QPGP]
24266
24191
-
Trp
CCA
[ENA]
¡û
>W1911709048
QPGQ01000014
Campylobacterota
Campylobacter novaezeelandiae B1491 [QPGQ]
65713
65638
-
Trp
CCA
[ENA]
¡û
>W1911709082
QPGR01000004
Campylobacterota
Campylobacter novaezeelandiae B423b [QPGR]
57788
57863
+
Trp
CCA
[ENA]
¡û
>C151034010
CP007766
Campylobacterota
Campylobacter peloridis LMG 23910 [CP007766]
453207
453282
+
Trp
CCA
[Ensembl]
¡û
>C151034056
CP007769
Campylobacterota
Campylobacter sp. RM16704 [CP007769]
428457
428532
+
Trp
CCA
[Ensembl]
¡û
>C151034279
CP007774
Campylobacterota
Campylobacter volucris LMG 24379 [CP007774]
399227
399302
+
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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