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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292067 (16 seq.)
>W1711250225
LYMV01000014
Alphaproteobacteria
Rickettsia sp. wb [LYMV]
221
296
+
Ala
GGC
[ENA]
¡û
>W1711250272
LYMW01000134
Alphaproteobacteria
Rickettsia sp. wq [LYMW]
175
100
-
Ala
GGC
[ENA]
¡û
>C171035056
CP015010
Alphaproteobacteria
Rickettsia bellii [CP015010]
862630
862555
-
Ala
GGC
-
¡û
>C171035096
CP015012
Alphaproteobacteria
Rickettsia amblyommatis [CP015012]
21166
21091
-
Ala
GGC
-
¡û
>C018311
CP000087
Alphaproteobacteria
Rickettsia bellii RML369-C [CP000087]
455742
455667
-
Ala
GGC
[Ensembl]
¡û
>w017284
AARC01000001
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [AARC]
1092618
1092695
+
Ala
GGC
[ENA]
¡û
>WENV180103585
OAPA01078183
[OAPA] marine metagenome; ENVO:00002010
135
210
+
Ala
GGC
[ENA]
¢þ
>C08008030
CP000849
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [CP000849]
1092619
1092694
+
Ala
GGC
[Ensembl]
¡û
>C191108631
CP033611
Alphaproteobacteria
Rickettsiales endosymbiont of Stachyamoeba lipophora RICK01 [CP033611]
1573178
1573253
+
Ala
GGC
-
¡û
>W1910831809
MWZE01000079
Alphaproteobacteria
Rickettsia endosymbiont of Culicoides newsteadi of Culicoides newsteadi RiCNE [MWZE]
4606
4681
+
Ala
GGC
[ENA]
¡û
>C151094949
CP012420
Alphaproteobacteria
Rickettsia amblyommatis Ac37 [CP012420]
991008
990933
-
Ala
GGC
-
¡û
>W1511574271
LANR01000001
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Ac/Pa [LANR]
1184020
1183945
-
Ala
GGC
[ENA]
¡û
>W1511574874
LAOI01000001
Alphaproteobacteria
Rickettsia bellii str. RML An4 [LAOI]
962445
962520
+
Ala
GGC
[ENA]
¡û
>W1511574909
LAOJ01000001
Alphaproteobacteria
Rickettsia bellii str. RML Mogi [LAOJ]
769764
769839
+
Ala
GGC
[ENA]
¡û
>C161051829
CP013133
Alphaproteobacteria
Rickettsia rhipicephali HJ#5 [CP013133]
710357
710282
-
Ala
GGC
[Ensembl]
¡û
>W121045261
AICO01000001
Alphaproteobacteria
Rickettsia helvetica C9P9 [AICO]
730105
730180
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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