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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292271 (38 seq.)
>W1711223918
LXTQ01000020
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
294312
294387
+
Thr
TGT
[ENA]
¡û
>W1711339983
MCAW01000002
Betaproteobacteria
Methylophilales bacterium LSUCC0135 [MCAW]
872
797
-
Thr
TGT
[ENA]
¡û
>WENV180209054
OBAK01010708
[OBAK] marine metagenome; ENVO.00002150
634
559
-
Thr
TGT
[ENA]
¢þ
>WENV180209447
OBAL01000913
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
3472
3397
-
Thr
TGT
[ENA]
¢þ
>WENV180361763
OBNW01000550
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
399
474
+
Thr
TGT
[ENA]
¢þ
>WENV180365772
OBOC01030156
[OBOC] marine metagenome; ocean water
301
376
+
Thr
TGT
[ENA]
¢þ
>WENV180393120
OBPP01080651
[OBPP] marine metagenome; ENVO:00002042
78
153
+
Thr
TGT
[ENA]
¢þ
>WENV180393973
OBPR01031452
[OBPR] marine metagenome; ENVO:00002042
383
458
+
Thr
TGT
[ENA]
¢þ
>WENV181189069
OEOF01000207
[OEOF] activated sludge metagenome; Activated Sludge
9835
9910
+
Thr
TGT
[ENA]
¢þ
>WENV181377303
OFRA01006710
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1710
1785
+
Thr
TGT
[ENA]
¢þ
>WENV181399928
OFSF01000325
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1857
1932
+
Thr
TGT
[ENA]
¢þ
>WENV181835648
OGVI01007666
[OGVI] freshwater metagenome; freshwater
225
300
+
Thr
TGT
[ENA]
¢þ
>WENV181841618
OGVS01001779
[OGVS] freshwater metagenome; freshwater
1258
1183
-
Thr
TGT
[ENA]
¢þ
>W141229544
BAMT01000006
Betaproteobacteria
Methylobacillus glycogenes JCM 2850 [BAMT]
189607
189682
+
Thr
TGT
[ENA]
¡û
>WENV001902
AACY020053799
Marine microbial communities from Global Ocean Sampling (GOS)
851
928
+
Thr
TGT
[ENA]
>WENV183726675
PJTO01000064
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
163820
163895
+
Thr
TGT
[ENA]
¢þ
>WENV170000148
AERA01017287
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
14
89
+
Thr
TGT
[ENA]
¢þ
>WENV170150413
CEOC01122267
[CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
436
361
-
Thr
TGT
[ENA]
¢þ
>WENV170166577
CEOO01079147
[CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
436
361
-
Thr
TGT
[ENA]
¢þ
>WENV170602791
FUWD010263900
[FUWD] metagenome; unknown
448
523
+
Thr
TGT
[ENA]
¢þ
>WENV170705834
LNAP01000436
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
27627
27552
-
Thr
TGT
[ENA]
¢þ
>WENV170705925
LNAP01000645
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23258
23183
-
Thr
TGT
[ENA]
¢þ
>WENV170708461
LNAP01084187
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
779
704
-
Thr
TGT
[ENA]
¢þ
>WENV170708752
LNAQ01000549
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8953
8878
-
Thr
TGT
[ENA]
¢þ
>WENV170708772
LNAQ01000945
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2506
2431
-
Thr
TGT
[ENA]
¢þ
>WENV170708814
LNAQ01001462
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
511
436
-
Thr
TGT
[ENA]
¢þ
>WENV170836646
MDSZ01135173
[MDSZ] marine metagenome; seawater
581
506
-
Thr
TGT
[ENA]
¢þ
>W09101036
AADX02000024
Betaproteobacteria
Methylobacillus flagellatus KT [AADX]
13502
13427
-
Thr
TGT
[ENA]
¡û
>W09111763
ABXG01000004
Betaproteobacteria
beta proteobacterium KB13 [ABXG]
239077
239002
-
Thr
TGT
[ENA]
¡û
>C09107555
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
303188
303263
+
Thr
TGT
[Ensembl]
¡û
>WENV11100506
AERA01017287
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
14
89
+
Thr
TGT
[ENA]
¡û
>C11114190
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
302660
302735
+
Thr
TGT
[Ensembl]
¡û
>W1511432018
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
1010489
1010564
+
Thr
TGT
[ENA]
¡û
>C161030818
CP011001
Betaproteobacteria
Methylophilales bacterium MBRSF5 [CP011001]
108058
108133
+
Thr
TGT
[Ensembl]
¡û
>C161030877
CP011002
Betaproteobacteria
Methylophilales bacterium MBRS-H7 [CP011002]
457918
457843
-
Thr
TGT
[Ensembl]
¡û
>C161030911
CP011003
Betaproteobacteria
Methylophilales bacterium MBRSG12 [CP011003]
457918
457843
-
Thr
TGT
[Ensembl]
¡û
>WENV056564
AACY023259512
Marine microbial communities from Global Ocean Sampling (GOS)
930
853
-
Thr
TGT
[ENA]
>W1611008289
LXTQ01000020
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
294312
294387
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK