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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292371 (267 seq.)
>W1711223158
LXSR01000013
Betaproteobacteria
Eikenella sp. NML96-A-049 [LXSR]
103096
103171
+
Asn
GTT
[ENA]
¡û
>W1711254526
LYQK01000104
Betaproteobacteria
Achromobacter xylosoxidans [LYQK]
106122
106047
-
Asn
GTT
[ENA]
¡û
>W1711254531
LYQK01000115
Betaproteobacteria
Achromobacter xylosoxidans [LYQK]
101372
101447
+
Asn
GTT
[ENA]
¡û
>W1711956564
NBTL01000001
Betaproteobacteria
Achromobacter xylosoxidans [NBTL]
696426
696501
+
Asn
GTT
[ENA]
¡û
>W1711956599
NBTL01000001
Betaproteobacteria
Achromobacter xylosoxidans [NBTL]
5762760
5762685
-
Asn
GTT
[ENA]
¡û
>C171008843
CP011189
Betaproteobacteria
Bordetella pertussis H729 [CP011189]
4021045
4021120
+
Asn
GTT
-
¡û
>C171008848
CP011189
Betaproteobacteria
Bordetella pertussis H729 [CP011189]
2750703
2750628
-
Asn
GTT
-
¡û
>C171009128
CP011195
Betaproteobacteria
Bordetella pertussis H806 [CP011195]
1275030
1275105
+
Asn
GTT
-
¡û
>C171009142
CP011195
Betaproteobacteria
Bordetella pertussis H806 [CP011195]
4016096
4016171
+
Asn
GTT
-
¡û
>C171010242
CP011242
Betaproteobacteria
Bordetella pertussis I975 [CP011242]
4019059
4019134
+
Asn
GTT
-
¡û
>C171010251
CP011242
Betaproteobacteria
Bordetella pertussis I975 [CP011242]
2800620
2800545
-
Asn
GTT
-
¡û
>C171011370
CP011695
Betaproteobacteria
Bordetella pertussis H437 [CP011695]
4017904
4017979
+
Asn
GTT
-
¡û
>C171011379
CP011695
Betaproteobacteria
Bordetella pertussis H437 [CP011695]
2778694
2778619
-
Asn
GTT
-
¡û
>C171012071
CP011709
Betaproteobacteria
Bordetella pertussis H864 [CP011709]
4019062
4019137
+
Asn
GTT
-
¡û
>C171012080
CP011709
Betaproteobacteria
Bordetella pertussis H864 [CP011709]
2800623
2800548
-
Asn
GTT
-
¡û
>C171012857
CP011725
Betaproteobacteria
Bordetella pertussis I263 [CP011725]
1364973
1365048
+
Asn
GTT
-
¡û
>C171012870
CP011725
Betaproteobacteria
Bordetella pertussis I263 [CP011725]
4016815
4016890
+
Asn
GTT
-
¡û
>C171013321
CP011734
Betaproteobacteria
Bordetella pertussis I375 [CP011734]
4025206
4025281
+
Asn
GTT
-
¡û
>C171013330
CP011734
Betaproteobacteria
Bordetella pertussis I375 [CP011734]
2781802
2781727
-
Asn
GTT
-
¡û
>C171013520
CP011738
Betaproteobacteria
Bordetella pertussis I386 [CP011738]
4016837
4016912
+
Asn
GTT
-
¡û
>C171013529
CP011738
Betaproteobacteria
Bordetella pertussis I386 [CP011738]
2776630
2776555
-
Asn
GTT
-
¡û
>C171015581
CP012081
Betaproteobacteria
Bordetella pertussis I351 [CP012081]
1278181
1278256
+
Asn
GTT
-
¡û
>C171015595
CP012081
Betaproteobacteria
Bordetella pertussis I351 [CP012081]
4021314
4021389
+
Asn
GTT
-
¡û
>C171015793
CP012085
Betaproteobacteria
Bordetella pertussis J010 [CP012085]
4020993
4021068
+
Asn
GTT
-
¡û
>C171015798
CP012085
Betaproteobacteria
Bordetella pertussis J010 [CP012085]
2751701
2751626
-
Asn
GTT
-
¡û
>C171020702
CP013093
Betaproteobacteria
Bordetella pertussis J194 [CP013093]
4018941
4019016
+
Asn
GTT
-
¡û
>C171020707
CP013093
Betaproteobacteria
Bordetella pertussis J194 [CP013093]
2749652
2749577
-
Asn
GTT
-
¡û
>C171028404
CP013884
Betaproteobacteria
Bordetella pertussis J093 [CP013884]
4026313
4026388
+
Asn
GTT
-
¡û
>C171028413
CP013884
Betaproteobacteria
Bordetella pertussis J093 [CP013884]
2781861
2781786
-
Asn
GTT
-
¡û
>C171029142
CP013899
Betaproteobacteria
Bordetella pertussis J162 [CP013899]
1275788
1275863
+
Asn
GTT
-
¡û
>C171029157
CP013899
Betaproteobacteria
Bordetella pertussis J162 [CP013899]
4014745
4014820
+
Asn
GTT
-
¡û
>W131204790
ATCF01000028
Betaproteobacteria
Sutterella wadsworthensis HGA0223 [ATCF]
34315
34390
+
Asn
GTT
[ENA]
¡û
>W131204792
ATCF01000029
Betaproteobacteria
Sutterella wadsworthensis HGA0223 [ATCF]
19
94
+
Asn
GTT
[ENA]
¡û
>WENV180129903
OATE01000321
[OATE] human gut metagenome; faeces
15684
15759
+
Asn
GTT
[ENA]
¢þ
>WENV180130753
OATG01000864
[OATG] human gut metagenome; faeces
1495
1420
-
Asn
GTT
[ENA]
¢þ
>WENV180131945
OATH01000406
[OATH] human gut metagenome; faeces
1487
1412
-
Asn
GTT
[ENA]
¢þ
>WENV180135147
OATK01007679
[OATK] human gut metagenome; faeces
1185
1110
-
Asn
GTT
[ENA]
¢þ
>WENV180136687
OATN01000350
[OATN] human gut metagenome; faeces
15683
15758
+
Asn
GTT
[ENA]
¢þ
>WENV180169040
OAVS01000576
[OAVS] human gut metagenome; faeces
20399
20474
+
Asn
GTT
[ENA]
¢þ
>WENV180186078
OAWU01001461
[OAWU] human gut metagenome; faeces
2931
3006
+
Asn
GTT
[ENA]
¢þ
>WENV180194157
OAZX01000536
[OAZX] human gut metagenome; faeces
16115
16190
+
Asn
GTT
[ENA]
¢þ
>WENV180195063
OAZY01001005
[OAZY] human gut metagenome; faeces
10780
10855
+
Asn
GTT
[ENA]
¢þ
>WENV180322252
OBKR01001776
[OBKR] human gut metagenome; feces
15962
16037
+
Asn
GTT
[ENA]
¢þ
>WENV180331053
OBKW01007300
[OBKW] human gut metagenome; human gut
98
173
+
Asn
GTT
[ENA]
¢þ
>WENV180408152
OBUS01000209
[OBUS] human gut metagenome; faeces
1487
1412
-
Asn
GTT
[ENA]
¢þ
>WENV180413318
OBVB01000570
[OBVB] human gut metagenome; faeces
15684
15759
+
Asn
GTT
[ENA]
¢þ
>WENV180426660
OBVZ01000216
[OBVZ] human gut metagenome; faeces
1457
1382
-
Asn
GTT
[ENA]
¢þ
>WENV180428628
OBWC01000921
[OBWC] human gut metagenome; faeces
1457
1382
-
Asn
GTT
[ENA]
¢þ
>WENV180448072
OBXE01000360
[OBXE] human gut metagenome; faeces
26686
26761
+
Asn
GTT
[ENA]
¢þ
>WENV180450145
OBXH01003052
[OBXH] human gut metagenome; faeces
1486
1411
-
Asn
GTT
[ENA]
¢þ
>WENV180450945
OBXI01000716
[OBXI] human gut metagenome; faeces
26356
26431
+
Asn
GTT
[ENA]
¢þ
>WENV180467519
OBYI01000482
[OBYI] human gut metagenome; faeces
773
698
-
Asn
GTT
[ENA]
¢þ
>WENV180469153
OBYM01000679
[OBYM] human gut metagenome; faeces
15758
15833
+
Asn
GTT
[ENA]
¢þ
>WENV180488455
OBZQ01059280
[OBZQ] human gut metagenome; faeces
3
78
+
Asn
GTT
[ENA]
¢þ
>WENV180493690
OBZZ01000181
[OBZZ] human gut metagenome; faeces
1494
1419
-
Asn
GTT
[ENA]
¢þ
>WENV180494754
OCAA01001009
[OCAA] human gut metagenome; faeces
1478
1403
-
Asn
GTT
[ENA]
¢þ
>WENV180500045
OCAI01001445
[OCAI] human gut metagenome; faeces
9724
9799
+
Asn
GTT
[ENA]
¢þ
>WENV180501594
OCAK01002377
[OCAK] human gut metagenome; faeces
6347
6422
+
Asn
GTT
[ENA]
¢þ
>WENV180534080
OCHM01000803
[OCHM] human gut metagenome; human gut
16085
16160
+
Asn
GTT
[ENA]
¢þ
>WENV180549680
OCIY01244106
[OCIY] human gut metagenome; human gut
173
98
-
Asn
GTT
[ENA]
¢þ
>WENV180553031
OCJH01307855
[OCJH] human gut metagenome; human gut
86
11
-
Asn
GTT
[ENA]
¢þ
>WENV180555752
OCJO01296993
[OCJO] human gut metagenome; human gut
98
173
+
Asn
GTT
[ENA]
¢þ
>WENV180573120
OCLU01321504
[OCLU] human gut metagenome; human gut
103
175
+
Asn
GTT
[ENA]
¢þ
>WENV180601582
OCPQ01090440
[OCPQ] human gut metagenome; faeces
35
110
+
Asn
GTT
[ENA]
¢þ
>WENV180642426
OCRP01000130
[OCRP] human gut metagenome; human gut
87989
88064
+
Asn
GTT
[ENA]
¢þ
>WENV180744522
ODHJ01076239
[ODHJ] human metagenome; G_DNA_Stool
103
28
-
Asn
GTT
[ENA]
¢þ
>WENV180754389
ODHT01268951
[ODHT] human metagenome; G_DNA_Stool
54
129
+
Asn
GTT
[ENA]
¢þ
>WENV180818269
ODJQ01014334
[ODJQ] human metagenome; G_DNA_Stool
1210
1285
+
Asn
GTT
[ENA]
¢þ
>WENV180826184
ODJZ01000889
[ODJZ] human metagenome; G_DNA_Stool
1724
1649
-
Asn
GTT
[ENA]
¢þ
>WENV180826185
ODJZ01000889
[ODJZ] human metagenome; G_DNA_Stool
1605
1530
-
Asn
GTT
[ENA]
¢þ
>WENV180826186
ODJZ01000889
[ODJZ] human metagenome; G_DNA_Stool
1486
1411
-
Asn
GTT
[ENA]
¢þ
>WENV180875871
ODLT01000959
[ODLT] human metagenome; G_DNA_Stool
1429
1354
-
Asn
GTT
[ENA]
¢þ
>WENV180892674
ODMR01000753
[ODMR] human metagenome; G_DNA_Stool
1563
1488
-
Asn
GTT
[ENA]
¢þ
>WENV180892675
ODMR01000753
[ODMR] human metagenome; G_DNA_Stool
1444
1369
-
Asn
GTT
[ENA]
¢þ
>WENV180913822
ODSV01000995
[ODSV] human metagenome; G_DNA_Stool
11566
11641
+
Asn
GTT
[ENA]
¢þ
>WENV180918509
ODTG01000416
[ODTG] human metagenome; G_DNA_Stool
1435
1360
-
Asn
GTT
[ENA]
¢þ
>WENV180946562
ODUE01000077
[ODUE] human metagenome; G_DNA_Stool
1613
1538
-
Asn
GTT
[ENA]
¢þ
>WENV180946563
ODUE01000077
[ODUE] human metagenome; G_DNA_Stool
1494
1419
-
Asn
GTT
[ENA]
¢þ
>WENV180956552
ODUK01001789
[ODUK] human metagenome; G_DNA_Stool
15563
15638
+
Asn
GTT
[ENA]
¢þ
>WENV180956553
ODUK01001789
[ODUK] human metagenome; G_DNA_Stool
15682
15757
+
Asn
GTT
[ENA]
¢þ
>WENV180987441
ODVK01024654
[ODVK] human metagenome; G_DNA_Supragingival plaque
75
2
-
Asn
GTT
[ENA]
¢þ
>WENV181006416
ODWA01019767
[ODWA] human metagenome; G_DNA_Buccal mucosa
867
942
+
Asn
GTT
[ENA]
¢þ
>WENV181047281
ODXZ01000199
[ODXZ] human metagenome; G_DNA_Stool
1494
1419
-
Asn
GTT
[ENA]
¢þ
>WENV181048531
ODYC01004331
[ODYC] human metagenome; G_DNA_Stool
2644
2719
+
Asn
GTT
[ENA]
¢þ
>WENV181093467
OEBW01001233
[OEBW] human metagenome; G_DNA_Stool
11560
11635
+
Asn
GTT
[ENA]
¢þ
>WENV181158676
OEIH01005453
[OEIH] human metagenome; G_DNA_Supragingival plaque
1255
1180
-
Asn
GTT
[ENA]
¢þ
>WENV181395095
OFRZ01005719
[OFRZ] human gut metagenome; human gut
173
98
-
Asn
GTT
[ENA]
¢þ
>WENV181418251
OGCM01002439
[OGCM] human gut metagenome; human gut
15654
15729
+
Asn
GTT
[ENA]
¢þ
>WENV181457117
OGEH01008805
[OGEH] metagenome; Human gut stool
1318
1243
-
Asn
GTT
[ENA]
¢þ
>WENV181514971
OGGW01000249
[OGGW] metagenome; Human gut stool
50020
50095
+
Asn
GTT
[ENA]
¢þ
>WENV181559396
OGIZ01000985
[OGIZ] metagenome; Human gut stool
12829
12904
+
Asn
GTT
[ENA]
¢þ
>WENV181561034
OGJD01000080
[OGJD] metagenome; Human gut stool
196
121
-
Asn
GTT
[ENA]
¢þ
>WENV181582105
OGKB01000448
[OGKB] metagenome; Human gut stool
28316
28391
+
Asn
GTT
[ENA]
¢þ
>WENV181604111
OGLI01008030
[OGLI] metagenome; Human gut stool
173
98
-
Asn
GTT
[ENA]
¢þ
>WENV181618048
OGMB01005289
[OGMB] metagenome; Human gut stool
3323
3398
+
Asn
GTT
[ENA]
¢þ
>WENV181620130
OGME01003485
[OGME] metagenome; Human gut stool
2116
2041
-
Asn
GTT
[ENA]
¢þ
>WENV181633086
OGMU01006204
[OGMU] metagenome; Human gut stool
291
216
-
Asn
GTT
[ENA]
¢þ
>WENV181633087
OGMU01006204
[OGMU] metagenome; Human gut stool
173
98
-
Asn
GTT
[ENA]
¢þ
>WENV181648978
OGNR01010891
[OGNR] metagenome; Human gut stool
1540
1465
-
Asn
GTT
[ENA]
¢þ
>WENV181662226
OGOG01025036
[OGOG] human gut metagenome; faeces
98
173
+
Asn
GTT
[ENA]
¢þ
>WENV181700445
OGPG01016092
[OGPG] human gut metagenome; faeces
98
173
+
Asn
GTT
[ENA]
¢þ
>WENV181723755
OGPW01020568
[OGPW] human gut metagenome; faeces
79
154
+
Asn
GTT
[ENA]
¢þ
>WENV181768353
OGRA01001505
[OGRA] human gut metagenome; faeces
20389
20464
+
Asn
GTT
[ENA]
¢þ
>WENV181787403
OGRN01034976
[OGRN] human gut metagenome; faeces
190
115
-
Asn
GTT
[ENA]
¢þ
>WENV181796557
OGRT01042250
[OGRT] human gut metagenome; faeces
96
171
+
Asn
GTT
[ENA]
¢þ
>WENV181835114
OGVH01012741
[OGVH] freshwater metagenome; freshwater
704
779
+
Asn
GTT
[ENA]
¢þ
>WENV181859748
OGWQ01007788
[OGWQ] human gut metagenome; faeces
2602
2527
-
Asn
GTT
[ENA]
¢þ
>WENV181931418
OGYQ01000386
[OGYQ] human gut metagenome; faeces
207
132
-
Asn
GTT
[ENA]
¢þ
>WENV182043629
OHDQ01001517
[OHDQ] human gut metagenome; feces
3414
3339
-
Asn
GTT
[ENA]
¢þ
>WENV182046512
OHDV01002993
[OHDV] human gut metagenome; feces
2248
2323
+
Asn
GTT
[ENA]
¢þ
>WENV182228652
OHRH01010587
[OHRH] human gut metagenome; feces
1757
1832
+
Asn
GTT
[ENA]
¢þ
>WENV182283835
OHVK01006502
[OHVK] human gut metagenome; feces
423
348
-
Asn
GTT
[ENA]
¢þ
>WENV182387763
OIEA01031613
[OIEA] human gut metagenome; feces
74
149
+
Asn
GTT
[ENA]
¢þ
>WENV182407117
OIFB01009766
[OIFB] human gut metagenome; human gut
239
164
-
Asn
GTT
[ENA]
¢þ
>WENV182407962
OIFE01000266
[OIFE] human gut metagenome; human gut
51526
51601
+
Asn
GTT
[ENA]
¢þ
>WENV182458221
OINH01021204
[OINH] human gut metagenome; human gut
330
255
-
Asn
GTT
[ENA]
¢þ
>WENV182521728
OIWQ01031907
[OIWQ] human gut metagenome; faeces
1334
1259
-
Asn
GTT
[ENA]
¢þ
>WENV182601743
OJJJ01000376
[OJJJ] metagenome; faeces
1551
1476
-
Asn
GTT
[ENA]
¢þ
>WENV182618117
OJKE01007671
[OJKE] metagenome; faeces
1046
971
-
Asn
GTT
[ENA]
¢þ
>WENV182692709
OJOG01003285
[OJOG] human gut metagenome; stool sample
1493
1418
-
Asn
GTT
[ENA]
¢þ
>WENV182693914
OJOH01013638
[OJOH] human gut metagenome; stool sample
1613
1538
-
Asn
GTT
[ENA]
¢þ
>WENV182693915
OJOH01013638
[OJOH] human gut metagenome; stool sample
1494
1419
-
Asn
GTT
[ENA]
¢þ
>WENV182729411
OJPX01016137
[OJPX] human gut metagenome; stool sample
98
173
+
Asn
GTT
[ENA]
¢þ
>WENV182749228
OJQX01015184
[OJQX] human gut metagenome; stool sample
508
433
-
Asn
GTT
[ENA]
¢þ
>WENV182760369
OJRL01000036
[OJRL] human gut metagenome; stool sample
1612
1537
-
Asn
GTT
[ENA]
¢þ
>WENV182760370
OJRL01000036
[OJRL] human gut metagenome; stool sample
1493
1418
-
Asn
GTT
[ENA]
¢þ
>WENV182772904
OJRY01017061
[OJRY] human gut metagenome; human gut
98
173
+
Asn
GTT
[ENA]
¢þ
>WENV182773364
OJRZ01000388
[OJRZ] human gut metagenome; human gut
1864
1789
-
Asn
GTT
[ENA]
¢þ
>WENV182774078
OJRZ01017493
[OJRZ] human gut metagenome; human gut
98
173
+
Asn
GTT
[ENA]
¢þ
>WENV182774471
OJSA01000195
[OJSA] human gut metagenome; human gut
2487
2412
-
Asn
GTT
[ENA]
¢þ
>WENV182775327
OJSA01017309
[OJSA] human gut metagenome; human gut
98
173
+
Asn
GTT
[ENA]
¢þ
>WENV182783133
OJSF01014327
[OJSF] human gut metagenome; human gut
1457
1382
-
Asn
GTT
[ENA]
¢þ
>WENV182784150
OJSG01019587
[OJSG] human gut metagenome; human gut
98
173
+
Asn
GTT
[ENA]
¢þ
>WENV182785292
OJSH01014791
[OJSH] human gut metagenome; human gut
98
173
+
Asn
GTT
[ENA]
¢þ
>WENV182786311
OJSI01016157
[OJSI] human gut metagenome; human gut
98
173
+
Asn
GTT
[ENA]
¢þ
>WENV182794673
OJSP01025298
[OJSP] human gut metagenome; human gut
1457
1382
-
Asn
GTT
[ENA]
¢þ
>WENV182868352
OKRS01004321
[OKRS] human gut metagenome; faeces
4744
4819
+
Asn
GTT
[ENA]
¢þ
>WENV182899255
OKSS01016361
[OKSS] human gut metagenome; feces
168
93
-
Asn
GTT
[ENA]
¢þ
>WENV182941353
OKVG01001288
[OKVG] human gut metagenome; human gut
9798
9873
+
Asn
GTT
[ENA]
¢þ
>WENV182943874
OKVI01001170
[OKVI] human gut metagenome; human gut
1509
1434
-
Asn
GTT
[ENA]
¢þ
>WENV182957631
OKWG01031304
[OKWG] human gut metagenome; human gut
609
534
-
Asn
GTT
[ENA]
¢þ
>WENV182957632
OKWG01031304
[OKWG] human gut metagenome; human gut
490
415
-
Asn
GTT
[ENA]
¢þ
>WENV182960687
OKWJ01034828
[OKWJ] human gut metagenome; human gut
33
108
+
Asn
GTT
[ENA]
¢þ
>WENV183006830
OLDF01021036
[OLDF] human gut metagenome; human gut
99
24
-
Asn
GTT
[ENA]
¢þ
>WENV183073876
OLIU01002116
[OLIU] human gut metagenome; stool sample
1457
1382
-
Asn
GTT
[ENA]
¢þ
>WENV183323754
OLVY01000581
[OLVY] human gut metagenome; feces
4752
4677
-
Asn
GTT
[ENA]
¢þ
>WENV183332197
OLWC01046154
[OLWC] human gut metagenome; feces
77
152
+
Asn
GTT
[ENA]
¢þ
>WENV183338114
OLWJ01020894
[OLWJ] human gut metagenome; feces
174
249
+
Asn
GTT
[ENA]
¢þ
>WENV183442610
OMCM01000606
[OMCM] human gut metagenome; feces
190
115
-
Asn
GTT
[ENA]
¢þ
>WENV183457811
OMDL01066851
[OMDL] human gut metagenome; feces
476
401
-
Asn
GTT
[ENA]
¢þ
>WENV183522405
ONZR01000004
[ONZR] human gut metagenome; human gut
1487
1412
-
Asn
GTT
[ENA]
¢þ
>WENV183524568
ONZT01001762
[ONZT] human gut metagenome; human gut
9697
9772
+
Asn
GTT
[ENA]
¢þ
>WENV183539980
OOAJ01001344
[OOAJ] human gut metagenome; human gut
9726
9801
+
Asn
GTT
[ENA]
¢þ
>WENV183732677
PJTX01006016
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
630
705
+
Asn
GTT
[ENA]
¢þ
>WENV183732700
PJTX01006870
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
134
59
-
Asn
GTT
[ENA]
¢þ
>WENV183764601
PPYE01320161
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
28340
28415
+
Asn
GTT
[ENA]
¢þ
>WENV183779844
PPYF01157479
[PPYF] human gut metagenome; stool from patient with Crohn's disease
56072
56147
+
Asn
GTT
[ENA]
¢þ
>WENV183785580
PPYF01281728
[PPYF] human gut metagenome; stool from patient with Crohn's disease
402
477
+
Asn
GTT
[ENA]
¢þ
>WENV170029606
CDYG01028721
[CDYG] gut metagenome; human stools
183
258
+
Asn
GTT
[ENA]
¢þ
>WENV170031029
CDYI01037355
[CDYI] gut metagenome; human stools
57
132
+
Asn
GTT
[ENA]
¢þ
>WENV170033793
CDYK01033108
[CDYK] gut metagenome; human stools
104
179
+
Asn
GTT
[ENA]
¢þ
>WENV170033794
CDYK01033108
[CDYK] gut metagenome; human stools
223
298
+
Asn
GTT
[ENA]
¢þ
>WENV170033795
CDYK01033108
[CDYK] gut metagenome; human stools
342
417
+
Asn
GTT
[ENA]
¢þ
>WENV170033796
CDYK01033108
[CDYK] gut metagenome; human stools
461
536
+
Asn
GTT
[ENA]
¢þ
>WENV170046146
CDYY01023172
[CDYY] gut metagenome; human stools
28636
28711
+
Asn
GTT
[ENA]
¢þ
>WENV170046147
CDYY01023172
[CDYY] gut metagenome; human stools
28755
28830
+
Asn
GTT
[ENA]
¢þ
>WENV170063807
CDZK01025297
[CDZK] gut metagenome; human stools
126
201
+
Asn
GTT
[ENA]
¢þ
>WENV170079981
CDZW01027523
[CDZW] gut metagenome; human stools
15824
15899
+
Asn
GTT
[ENA]
¢þ
>WENV170081412
CDZY01014780
[CDZY] gut metagenome; human stools
3342
3267
-
Asn
GTT
[ENA]
¢þ
>WENV170082754
CEAA01007343
[CEAA] gut metagenome; human stools
1573
1498
-
Asn
GTT
[ENA]
¢þ
>WENV170090443
CEAF01044983
[CEAF] gut metagenome; human stools
104
179
+
Asn
GTT
[ENA]
¢þ
>WENV170091968
CEAG01031098
[CEAG] gut metagenome; human stools
1573
1498
-
Asn
GTT
[ENA]
¢þ
>WENV170092939
CEAH01004173
[CEAH] gut metagenome; human stools
104
179
+
Asn
GTT
[ENA]
¢þ
>WENV170095772
CEAJ01017402
[CEAJ] gut metagenome; human stools
1573
1498
-
Asn
GTT
[ENA]
¢þ
>WENV170095973
CEAK01000020
[CEAK] gut metagenome; human stools
28784
28859
+
Asn
GTT
[ENA]
¢þ
>WENV170097228
CEAL01017729
[CEAL] gut metagenome; human stools
1516
1441
-
Asn
GTT
[ENA]
¢þ
>WENV170784635
MCNF01000168
[MCNF] bioreactor metagenome; arboretum soil enriched with benzalkonium chloride
708
633
-
Asn
GTT
[ENA]
¢þ
>C181022634
CP016967
Betaproteobacteria
Bordetella pertussis E025 [CP016967]
1276844
1276919
+
Asn
GTT
-
¡û
>C181022648
CP016967
Betaproteobacteria
Bordetella pertussis E025 [CP016967]
4013694
4013769
+
Asn
GTT
-
¡û
>C181023644
CP017121
Betaproteobacteria
Bordetella pertussis J172 [CP017121]
4019937
4020012
+
Asn
GTT
-
¡û
>C181023653
CP017121
Betaproteobacteria
Bordetella pertussis J172 [CP017121]
2777589
2777514
-
Asn
GTT
-
¡û
>C181023743
CP017123
Betaproteobacteria
Bordetella pertussis J153 [CP017123]
4018928
4019003
+
Asn
GTT
-
¡û
>C181023748
CP017123
Betaproteobacteria
Bordetella pertussis J153 [CP017123]
2748594
2748519
-
Asn
GTT
-
¡û
>C181024219
CP017163
Betaproteobacteria
Bordetella pertussis J108 [CP017163]
4018889
4018964
+
Asn
GTT
-
¡û
>C181024224
CP017163
Betaproteobacteria
Bordetella pertussis J108 [CP017163]
2748568
2748493
-
Asn
GTT
-
¡û
>C181028759
CP017883
Betaproteobacteria
Bordetella pertussis I385 [CP017883]
4018966
4019041
+
Asn
GTT
-
¡û
>C181028764
CP017883
Betaproteobacteria
Bordetella pertussis I385 [CP017883]
2750725
2750650
-
Asn
GTT
-
¡û
>C181034067
CP018893
Betaproteobacteria
Bordetella holmesii [CP018893]
1410262
1410337
+
Asn
GTT
-
¡û
>C181034107
CP018893
Betaproteobacteria
Bordetella holmesii [CP018893]
146557
146482
-
Asn
GTT
-
¡û
>C181045689
CP020649
Betaproteobacteria
Bordetella bronchiseptica E010 [CP020649]
2092972
2093047
+
Asn
GTT
-
¡û
>C181045700
CP020649
Betaproteobacteria
Bordetella bronchiseptica E010 [CP020649]
5075633
5075708
+
Asn
GTT
-
¡û
>C181045899
CP020653
Betaproteobacteria
Bordetella holmesii C690 [CP020653]
1410252
1410327
+
Asn
GTT
-
¡û
>C181045939
CP020653
Betaproteobacteria
Bordetella holmesii C690 [CP020653]
146557
146482
-
Asn
GTT
-
¡û
>C181046932
CP020819
Betaproteobacteria
Bordetella bronchiseptica D973 [CP020819]
2051166
2051241
+
Asn
GTT
-
¡û
>C181046943
CP020819
Betaproteobacteria
Bordetella bronchiseptica D973 [CP020819]
5071664
5071739
+
Asn
GTT
-
¡û
>C191017023
CP019931
Betaproteobacteria
Bordetella parapertussis E843 [CP019931]
1975681
1975756
+
Asn
GTT
-
¡û
>C191017043
CP019931
Betaproteobacteria
Bordetella parapertussis E843 [CP019931]
4649159
4649234
+
Asn
GTT
-
¡û
>C191029515
CP025068
Betaproteobacteria
Bordetella parapertussis B144 [CP025068]
1975689
1975764
+
Asn
GTT
-
¡û
>C191029535
CP025068
Betaproteobacteria
Bordetella parapertussis B144 [CP025068]
4649160
4649235
+
Asn
GTT
-
¡û
>C191032789
CP025356
Betaproteobacteria
Bordetella pertussis H034 [CP025356]
1364976
1365051
+
Asn
GTT
-
¡û
>C191032802
CP025356
Betaproteobacteria
Bordetella pertussis H034 [CP025356]
4016997
4017072
+
Asn
GTT
-
¡û
>C191032851
CP025357
Betaproteobacteria
Bordetella pertussis F578 [CP025357]
4009578
4009653
+
Asn
GTT
-
¡û
>C191032860
CP025357
Betaproteobacteria
Bordetella pertussis F578 [CP025357]
2769326
2769251
-
Asn
GTT
-
¡û
>C191033756
CP025375
Betaproteobacteria
Bordetella pertussis I439 [CP025375]
4018936
4019011
+
Asn
GTT
-
¡û
>C191033761
CP025375
Betaproteobacteria
Bordetella pertussis I439 [CP025375]
2749650
2749575
-
Asn
GTT
-
¡û
>C191036074
CP025525
Betaproteobacteria
Bordetella pertussis I420 [CP025525]
1278939
1279014
+
Asn
GTT
-
¡û
>C191036089
CP025525
Betaproteobacteria
Bordetella pertussis I420 [CP025525]
4024180
4024255
+
Asn
GTT
-
¡û
>C191042430
CP026431
Betaproteobacteria
Bordetella pertussis J363 [CP026431]
4026777
4026852
+
Asn
GTT
-
¡û
>C191042435
CP026431
Betaproteobacteria
Bordetella pertussis J363 [CP026431]
2538336
2538261
-
Asn
GTT
-
¡û
>C191042562
CP026434
Betaproteobacteria
Bordetella pertussis J357 [CP026434]
1246051
1246126
+
Asn
GTT
-
¡û
>C191042577
CP026434
Betaproteobacteria
Bordetella pertussis J357 [CP026434]
4019983
4020058
+
Asn
GTT
-
¡û
>C191042878
CP026440
Betaproteobacteria
Bordetella pertussis J323 [CP026440]
4019988
4020063
+
Asn
GTT
-
¡û
>C191042883
CP026440
Betaproteobacteria
Bordetella pertussis J323 [CP026440]
2750698
2750623
-
Asn
GTT
-
¡û
>C191044228
CP026467
Betaproteobacteria
Bordetella pertussis J401 [CP026467]
4026306
4026381
+
Asn
GTT
-
¡û
>C191044237
CP026467
Betaproteobacteria
Bordetella pertussis J401 [CP026467]
2783957
2783882
-
Asn
GTT
-
¡û
>C191045625
CP026624
Betaproteobacteria
Bordetella pertussis J525 [CP026624]
4019822
4019897
+
Asn
GTT
-
¡û
>C191045630
CP026624
Betaproteobacteria
Bordetella pertussis J525 [CP026624]
2750615
2750540
-
Asn
GTT
-
¡û
>C191045930
CP026630
Betaproteobacteria
Bordetella pertussis J378 [CP026630]
4019197
4019272
+
Asn
GTT
-
¡û
>C191045936
CP026630
Betaproteobacteria
Bordetella pertussis J378 [CP026630]
2771782
2771707
-
Asn
GTT
-
¡û
>C191047205
CP026888
Betaproteobacteria
Bordetella pertussis J695 [CP026888]
4017903
4017978
+
Asn
GTT
-
¡û
>C191047210
CP026888
Betaproteobacteria
Bordetella pertussis J695 [CP026888]
2747569
2747494
-
Asn
GTT
-
¡û
>C191047503
CP026894
Betaproteobacteria
Bordetella pertussis J683 [CP026894]
4023156
4023231
+
Asn
GTT
-
¡û
>C191047509
CP026894
Betaproteobacteria
Bordetella pertussis J683 [CP026894]
2779760
2779685
-
Asn
GTT
-
¡û
>C191047788
CP026900
Betaproteobacteria
Bordetella pertussis J656 [CP026900]
1278177
1278252
+
Asn
GTT
-
¡û
>C191047802
CP026900
Betaproteobacteria
Bordetella pertussis J656 [CP026900]
4021334
4021409
+
Asn
GTT
-
¡û
>C191110375
CP033730
Betaproteobacteria
Achromobacter denitrificans PheN1 [CP033730]
2248818
2248893
+
Asn
GTT
-
¡û
>C191110416
CP033730
Betaproteobacteria
Achromobacter denitrificans PheN1 [CP033730]
429279
429204
-
Asn
GTT
-
¡û
>C191206962
LR134329
Betaproteobacteria
Bordetella parapertussis NCTC10524 [LR134329]
936146
936221
+
Asn
GTT
-
¡û
>C191206972
LR134329
Betaproteobacteria
Bordetella parapertussis NCTC10524 [LR134329]
3038137
3038212
+
Asn
GTT
-
¡û
>W1911200393
NRER01000011
Betaproteobacteria
Bordetella bronchiseptica SH03 [NRER]
146639
146714
+
Asn
GTT
[ENA]
¡û
>W1911200406
NRER01000054
Betaproteobacteria
Bordetella bronchiseptica SH03 [NRER]
13963
14038
+
Asn
GTT
[ENA]
¡û
>W1911238557
NSCW01000051
Betaproteobacteria
Bordetella pertussis VBD1 [NSCW]
1389
1314
-
Asn
GTT
[ENA]
¡û
>W1911238573
NSCW01000330
Betaproteobacteria
Bordetella pertussis VBD1 [NSCW]
1739
1664
-
Asn
GTT
[ENA]
¡û
>W1911747019
QVTB01000001
Betaproteobacteria
Bordetella avium BA3 [QVTB]
800444
800369
-
Asn
GTT
[ENA]
¡û
>W1911747053
QVTB01000006
Betaproteobacteria
Bordetella avium BA3 [QVTB]
91323
91248
-
Asn
GTT
[ENA]
¡û
>W1810576188
QENE01000003
Betaproteobacteria
Achromobacter xylosoxidans 5146 [QENE]
177774
177849
+
Asn
GTT
[ENA]
¡û
>W1810576194
QENE01000005
Betaproteobacteria
Achromobacter xylosoxidans 5146 [QENE]
69137
69062
-
Asn
GTT
[ENA]
¡û
>W1810721253
QNRV01000035
Betaproteobacteria
Sutterella wadsworthensis DSM 14016 [QNRV]
1526
1451
-
Asn
GTT
[ENA]
¡û
>C151025442
CP007495
Betaproteobacteria
Bordetella holmesii 44057 [CP007495]
2728098
2728173
+
Asn
GTT
[Ensembl]
¡û
>C151025460
CP007495
Betaproteobacteria
Bordetella holmesii 44057 [CP007495]
1466462
1466387
-
Asn
GTT
[Ensembl]
¡û
>C151104989
LN849008
Betaproteobacteria
Bordetella pertussis D420 [LN849008]
245349
245424
+
Asn
GTT
[Ensembl]
¡û
>C151105022
LN849008
Betaproteobacteria
Bordetella pertussis D420 [LN849008]
3111493
3111418
-
Asn
GTT
[Ensembl]
¡û
>W1510135559
CFXX01000042
Betaproteobacteria
Bordetella pertussis B159 [CFXX]
2756
2681
-
Asn
GTT
[ENA]
¡û
>W1510135576
CFXX01000343
Betaproteobacteria
Bordetella pertussis B159 [CFXX]
1801
1726
-
Asn
GTT
[ENA]
¡û
>W1510138253
CGAD01000041
Betaproteobacteria
Bordetella pertussis B002 [CGAD]
5651
5576
-
Asn
GTT
[ENA]
¡û
>W1510138274
CGAD01000177
Betaproteobacteria
Bordetella pertussis B002 [CGAD]
2782
2707
-
Asn
GTT
[ENA]
¡û
>W1510138562
CGAK01000043
Betaproteobacteria
Bordetella pertussis B091 [CGAK]
2766
2691
-
Asn
GTT
[ENA]
¡û
>W1510138576
CGAK01000341
Betaproteobacteria
Bordetella pertussis B091 [CGAK]
1796
1721
-
Asn
GTT
[ENA]
¡û
>W1510145652
CGFZ01000414
Betaproteobacteria
Bordetella pertussis B287 [CGFZ]
276
351
+
Asn
GTT
[ENA]
¡û
>W1510189958
CHKZ01000354
Betaproteobacteria
Bordetella pertussis B272 [CHKZ]
275
350
+
Asn
GTT
[ENA]
¡û
>W11120052
ADMF01000045
Betaproteobacteria
Sutterella wadsworthensis 3_1_45B [ADMF]
1913
1838
-
Asn
GTT
[ENA]
¡û
>W1511579413
LARC01000001
Betaproteobacteria
Burkholderia sp. K4410.MGS-135 [LARC]
2681
2606
-
Asn
GTT
[ENA]
¡û
>C161024224
CP010263
Betaproteobacteria
Bordetella pertussis I646 [CP010263]
1276846
1276921
+
Asn
GTT
-
¡û
>C161024237
CP010263
Betaproteobacteria
Bordetella pertussis I646 [CP010263]
4017911
4017986
+
Asn
GTT
-
¡û
>C161024337
CP010265
Betaproteobacteria
Bordetella pertussis I669 [CP010265]
4015979
4016054
+
Asn
GTT
-
¡û
>C161024346
CP010265
Betaproteobacteria
Bordetella pertussis I669 [CP010265]
2778872
2778797
-
Asn
GTT
-
¡û
>C161028931
CP010840
Betaproteobacteria
Bordetella pertussis H379 [CP010840]
4018945
4019020
+
Asn
GTT
-
¡û
>C161028940
CP010840
Betaproteobacteria
Bordetella pertussis H379 [CP010840]
2778695
2778620
-
Asn
GTT
-
¡û
>C161035782
CP011447
Betaproteobacteria
Bordetella pertussis B3913 [CP011447]
1277907
1277982
+
Asn
GTT
-
¡û
>C161035797
CP011447
Betaproteobacteria
Bordetella pertussis B3913 [CP011447]
4022111
4022186
+
Asn
GTT
-
¡û
>C161096205
CP016338
Betaproteobacteria
Bordetella pertussis B202 [CP016338]
1280003
1280078
+
Asn
GTT
-
¡û
>C161096215
CP016338
Betaproteobacteria
Bordetella pertussis B202 [CP016338]
4042590
4042665
+
Asn
GTT
-
¡û
>W1610093344
CYSX01000002
Betaproteobacteria
Achromobacter dolens 2789STDY5608607 [CYSX]
265562
265487
-
Asn
GTT
[ENA]
¡û
>W1610093357
CYSX01000007
Betaproteobacteria
Achromobacter dolens 2789STDY5608607 [CYSX]
298585
298660
+
Asn
GTT
[ENA]
¡û
>W1611007571
LXSR01000013
Betaproteobacteria
Eikenella sp. NML96-A-049 [LXSR]
103096
103171
+
Asn
GTT
[ENA]
¡û
>W1710096552
CYSX01000002
Betaproteobacteria
Achromobacter dolens 2789STDY5608607 [CYSX]
265562
265487
-
Asn
GTT
[ENA]
¡û
>W1710096565
CYSX01000007
Betaproteobacteria
Achromobacter dolens 2789STDY5608607 [CYSX]
298585
298660
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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