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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292480 (5 seq.)
>WENV182530989
OIWV01020846
[OIWV] human gut metagenome; faeces
324
248
-
Val
CAC
[ENA]
¢þ
>WENV183069027
OLIQ01061180
[OLIQ] metagenome; faeces
150
74
-
Val
CAC
[ENA]
¢þ
>WENV183129371
OLNZ01100517
[OLNZ] human gut metagenome; faeces
118
194
+
Val
CAC
[ENA]
¢þ
>WENV183212760
OLQD01007787
[OLQD] human gut metagenome; faeces
2806
2882
+
Val
CAC
[ENA]
¢þ
>WENV183634225
OOIG01012501
[OOIG] human gut metagenome; human gut
3218
3294
+
Val
CAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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