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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.292612 (124 seq.)
>W1711120526
LUGJ01000011
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
38131
38056
-
Val
TAC
[ENA]
¡û
>W1711120554
LUGJ01000026
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
195
270
+
Val
TAC
[ENA]
¡û
>W131232346
AUJE01000022
Bacillota
Selenomonas ruminantium subsp. ruminantium ATCC 12561 [AUJE]
60641
60566
-
Val
TAC
[ENA]
¡û
>W131232374
AUJE01000059
Bacillota
Selenomonas ruminantium subsp. ruminantium ATCC 12561 [AUJE]
7504
7429
-
Val
TAC
[ENA]
¡û
>WENV180118955
OASD01004012
[OASD] human gut metagenome; ENVO:feces
2588
2513
-
Val
TAC
[ENA]
¢þ
>WENV180119075
OASD01008441
[OASD] human gut metagenome; ENVO:feces
59
134
+
Val
TAC
[ENA]
¢þ
>WENV180184762
OAWS01001786
[OAWS] human gut metagenome; faeces
60
135
+
Val
TAC
[ENA]
¢þ
>WENV180236089
OBCU01101933
[OBCU] human gut metagenome; human gut
76
1
-
Val
TAC
[ENA]
¢þ
>WENV180305961
OBJO01018702
[OBJO] human gut metagenome; human gut
334
409
+
Val
TAC
[ENA]
¢þ
>WENV180338401
OBLI01000291
[OBLI] pig gut metagenome; faeces
26062
26137
+
Val
TAC
[ENA]
¢þ
>WENV180575050
OCLX01047326
[OCLX] human gut metagenome; human gut
144
219
+
Val
TAC
[ENA]
¢þ
>WENV180578860
OCMC01003470
[OCMC] human gut metagenome; human gut
1574
1499
-
Val
TAC
[ENA]
¢þ
>WENV180578908
OCMC01005783
[OCMC] human gut metagenome; human gut
1055
1130
+
Val
TAC
[ENA]
¢þ
>WENV180671982
OCVV011323323
[OCVV] gut metagenome; gut
793
718
-
Val
TAC
[ENA]
¢þ
>WENV180671995
OCVV011323323
[OCVV] gut metagenome; gut
793
718
-
Val
TAC
[ENA]
¢þ
>WENV180673529
OCVV011340964
[OCVV] gut metagenome; gut
2171
2096
-
Val
TAC
[ENA]
¢þ
>WENV180673532
OCVV011340964
[OCVV] gut metagenome; gut
2171
2096
-
Val
TAC
[ENA]
¢þ
>WENV180722036
ODGL01059985
[ODGL] human metagenome; G_DNA_Subgingival plaque
76
1
-
Val
TAC
[ENA]
¢þ
>WENV180734933
ODGZ01036879
[ODGZ] human metagenome; G_DNA_Supragingival plaque
239
314
+
Val
TAC
[ENA]
¢þ
>WENV180797305
ODJB01045188
[ODJB] human metagenome; G_DNA_Supragingival plaque
742
667
-
Val
TAC
[ENA]
¢þ
>WENV180797470
ODJB01064523
[ODJB] human metagenome; G_DNA_Supragingival plaque
298
373
+
Val
TAC
[ENA]
¢þ
>WENV180826225
ODJZ01001036
[ODJZ] human metagenome; G_DNA_Stool
20537
20462
-
Val
TAC
[ENA]
¢þ
>WENV180826468
ODJZ01003127
[ODJZ] human metagenome; G_DNA_Stool
2465
2390
-
Val
TAC
[ENA]
¢þ
>WENV180840911
ODKJ01016055
[ODKJ] human metagenome; G_DNA_Stool
1264
1189
-
Val
TAC
[ENA]
¢þ
>WENV180897402
ODNI01020747
[ODNI] human metagenome; G_DNA_Tongue dorsum
134
59
-
Val
TAC
[ENA]
¢þ
>WENV180945000
ODUC01056390
[ODUC] human metagenome; G_DNA_Supragingival plaque
902
827
-
Val
TAC
[ENA]
¢þ
>WENV180975688
ODUY01015557
[ODUY] human metagenome; G_DNA_Supragingival plaque
488
563
+
Val
TAC
[ENA]
¢þ
>WENV180995900
ODVR01031114
[ODVR] human metagenome; G_DNA_Stool
291
366
+
Val
TAC
[ENA]
¢þ
>WENV180999407
ODVT01017611
[ODVT] human metagenome; G_DNA_Buccal mucosa
1110
1185
+
Val
TAC
[ENA]
¢þ
>WENV180999534
ODVT01027701
[ODVT] human metagenome; G_DNA_Buccal mucosa
469
544
+
Val
TAC
[ENA]
¢þ
>WENV181080507
OEAS01052947
[OEAS] human metagenome; G_DNA_Supragingival plaque
637
712
+
Val
TAC
[ENA]
¢þ
>WENV181091387
OEBC01029819
[OEBC] human metagenome; G_DNA_Supragingival plaque
386
311
-
Val
TAC
[ENA]
¢þ
>WENV181354994
OFMT01000225
[OFMT] human gut metagenome; human gut
55665
55590
-
Val
TAC
[ENA]
¢þ
>WENV181394542
OFRZ01000166
[OFRZ] human gut metagenome; human gut
68002
67927
-
Val
TAC
[ENA]
¢þ
>WENV181455311
OGEE01008961
[OGEE] metagenome; Human gut stool
1113
1038
-
Val
TAC
[ENA]
¢þ
>WENV181456858
OGEH01000865
[OGEH] metagenome; Human gut stool
15989
15914
-
Val
TAC
[ENA]
¢þ
>WENV181464525
OGEP01001227
[OGEP] metagenome; Human gut stool
8524
8599
+
Val
TAC
[ENA]
¢þ
>W141147511
AWXA01000037
Bacillota
Megasphaera vaginalis (ex Srinivasan et al. 2021) BV3C16-1 [AWXA]
100176
100101
-
Val
TAC
[ENA]
¡û
>W141147528
AWXA01000053
Bacillota
Megasphaera vaginalis (ex Srinivasan et al. 2021) BV3C16-1 [AWXA]
527
602
+
Val
TAC
[ENA]
¡û
>WENV181555323
OGIT01000922
[OGIT] metagenome; Human gut stool
150
225
+
Val
TAC
[ENA]
¢þ
>WENV181577109
OGJX01000119
[OGJX] metagenome; Human gut stool
82959
82884
-
Val
TAC
[ENA]
¢þ
>WENV181645212
OGNM01045983
[OGNM] metagenome; Human gut stool
383
458
+
Val
TAC
[ENA]
¢þ
>WENV181868387
OGWX01000131
[OGWX] human gut metagenome; faeces
7470
7545
+
Val
TAC
[ENA]
¢þ
>WENV181868407
OGWX01000157
[OGWX] human gut metagenome; faeces
28096
28171
+
Val
TAC
[ENA]
¢þ
>WENV181871205
OGWZ01000017
[OGWZ] human gut metagenome; faeces
24596
24671
+
Val
TAC
[ENA]
¢þ
>WENV181876461
OGXC01011433
[OGXC] human gut metagenome; faeces
1281
1206
-
Val
TAC
[ENA]
¢þ
>WENV181913704
OGYE01019870
[OGYE] human gut metagenome; faeces
2001
1926
-
Val
TAC
[ENA]
¢þ
>WENV181924048
OGYL01004067
[OGYL] human gut metagenome; faeces
59
134
+
Val
TAC
[ENA]
¢þ
>WENV181949342
OGZF01001057
[OGZF] human gut metagenome; faeces
18026
17951
-
Val
TAC
[ENA]
¢þ
>WENV181970096
OGZX01001904
[OGZX] human gut metagenome; faeces
10258
10333
+
Val
TAC
[ENA]
¢þ
>WENV181974513
OHAB01047452
[OHAB] human gut metagenome; faeces
112
187
+
Val
TAC
[ENA]
¢þ
>WENV181976090
OHAD01000240
[OHAD] human gut metagenome; faeces
10260
10335
+
Val
TAC
[ENA]
¢þ
>WENV181990873
OHAP01028987
[OHAP] human gut metagenome; faeces
59
134
+
Val
TAC
[ENA]
¢þ
>WENV182000713
OHAY01000360
[OHAY] human gut metagenome; faeces
149
224
+
Val
TAC
[ENA]
¢þ
>WENV182013895
OHBO01029302
[OHBO] human gut metagenome; feces
265
340
+
Val
TAC
[ENA]
¢þ
>WENV182083556
OHGO01009697
[OHGO] human gut metagenome; feces
612
537
-
Val
TAC
[ENA]
¢þ
>WENV182135669
OHKJ01001264
[OHKJ] human gut metagenome; feces
5952
6027
+
Val
TAC
[ENA]
¢þ
>WENV182248837
OHSP01001100
[OHSP] human gut metagenome; feces
9378
9303
-
Val
TAC
[ENA]
¢þ
>WENV182273452
OHUJ01000512
[OHUJ] human gut metagenome; feces
7691
7766
+
Val
TAC
[ENA]
¢þ
>WENV182291182
OHVZ01000367
[OHVZ] human gut metagenome; feces
21701
21626
-
Val
TAC
[ENA]
¢þ
>WENV182389924
OIED01008390
[OIED] human gut metagenome; feces
62
137
+
Val
TAC
[ENA]
¢þ
>WENV182510406
OIWK01001894
[OIWK] human gut metagenome; faeces
5
80
+
Val
TAC
[ENA]
¢þ
>WENV182517082
OIWO01001242
[OIWO] human gut metagenome; faeces
20287
20212
-
Val
TAC
[ENA]
¢þ
>WENV182524507
OIWT01000275
[OIWT] human gut metagenome; faeces
10231
10306
+
Val
TAC
[ENA]
¢þ
>WENV182732792
OJQB01029021
[OJQB] human gut metagenome; stool sample
101
176
+
Val
TAC
[ENA]
¢þ
>WENV182757596
OJRH01011289
[OJRH] human gut metagenome; stool sample
81
6
-
Val
TAC
[ENA]
¢þ
>WENV182767170
OJRV01000058
[OJRV] human gut metagenome; human gut
125288
125213
-
Val
TAC
[ENA]
¢þ
>WENV182770291
OJRX01000052
[OJRX] human gut metagenome; human gut
125288
125213
-
Val
TAC
[ENA]
¢þ
>WENV182773231
OJRZ01000162
[OJRZ] human gut metagenome; human gut
75216
75141
-
Val
TAC
[ENA]
¢þ
>WENV182774461
OJSA01000190
[OJSA] human gut metagenome; human gut
161
236
+
Val
TAC
[ENA]
¢þ
>WENV182781269
OJSE01002792
[OJSE] human gut metagenome; human gut
161
236
+
Val
TAC
[ENA]
¢þ
>WENV182784452
OJSH01000198
[OJSH] human gut metagenome; human gut
161
236
+
Val
TAC
[ENA]
¢þ
>WENV182786614
OJSJ01000119
[OJSJ] human gut metagenome; human gut
158
233
+
Val
TAC
[ENA]
¢þ
>WENV182791663
OJSN01012588
[OJSN] human gut metagenome; human gut
541
466
-
Val
TAC
[ENA]
¢þ
>WENV182793850
OJSP01001789
[OJSP] human gut metagenome; human gut
17320
17245
-
Val
TAC
[ENA]
¢þ
>WENV182868221
OKRS01002625
[OKRS] human gut metagenome; faeces
2258
2333
+
Val
TAC
[ENA]
¢þ
>WENV182890223
OKSF01010756
[OKSF] human gut metagenome; faeces
59
134
+
Val
TAC
[ENA]
¢þ
>WENV182917765
OKTV01000820
[OKTV] human gut metagenome; feces
43
118
+
Val
TAC
[ENA]
¢þ
>WENV182921290
OKUB01005611
[OKUB] human gut metagenome; feces
408
483
+
Val
TAC
[ENA]
¢þ
>WENV182929401
OKUQ01000849
[OKUQ] human gut metagenome; feces
15646
15571
-
Val
TAC
[ENA]
¢þ
>WENV182932682
OKUU01026593
[OKUU] human gut metagenome; feces
59
134
+
Val
TAC
[ENA]
¢þ
>WENV182943429
OKVI01000069
[OKVI] human gut metagenome; human gut
94861
94786
-
Val
TAC
[ENA]
¢þ
>WENV182943600
OKVI01000234
[OKVI] human gut metagenome; human gut
2
77
+
Val
TAC
[ENA]
¢þ
>WENV183029558
OLFW01000562
[OLFW] human gut metagenome; faeces
20232
20157
-
Val
TAC
[ENA]
¢þ
>WENV183032299
OLFY01000053
[OLFY] human gut metagenome; faeces
159199
159124
-
Val
TAC
[ENA]
¢þ
>WENV183179134
OLPH01001567
[OLPH] human gut metagenome; faeces
6563
6638
+
Val
TAC
[ENA]
¢þ
>WENV183206716
OLQA01002252
[OLQA] human gut metagenome; faeces
5889
5964
+
Val
TAC
[ENA]
¢þ
>WENV183269293
OLRV01000160
[OLRV] human gut metagenome; faeces
15134
15059
-
Val
TAC
[ENA]
¢þ
>WENV183325657
OLVZ01001625
[OLVZ] human gut metagenome; faeces
57
132
+
Val
TAC
[ENA]
¢þ
>WENV183349370
OLWW01000193
[OLWW] human gut metagenome; feces
9688
9613
-
Val
TAC
[ENA]
¢þ
>WENV183394521
OLZG01002001
[OLZG] human gut metagenome; feces
6709
6634
-
Val
TAC
[ENA]
¢þ
>WENV183420061
OMBA01000233
[OMBA] human gut metagenome; feces
30350
30275
-
Val
TAC
[ENA]
¢þ
>WENV183465696
OMEB01000517
[OMEB] human gut metagenome; feces
57
132
+
Val
TAC
[ENA]
¢þ
>WENV183469208
OMEI01000728
[OMEI] human gut metagenome; feces
5453
5378
-
Val
TAC
[ENA]
¢þ
>WENV183487699
OMFY01000200
[OMFY] human gut metagenome; feces
43275
43200
-
Val
TAC
[ENA]
¢þ
>WENV183599929
OODH01023417
[OODH] human gut metagenome; human gut
1014
1089
+
Val
TAC
[ENA]
¢þ
>WENV183783438
PPYF01229199
[PPYF] human gut metagenome; stool from patient with Crohn's disease
81
156
+
Val
TAC
[ENA]
¢þ
>WENV183789204
PPYF01384795
[PPYF] human gut metagenome; stool from patient with Crohn's disease
72762
72687
-
Val
TAC
[ENA]
¢þ
>WENV183789240
PPYF01384847
[PPYF] human gut metagenome; stool from patient with Crohn's disease
57320
57245
-
Val
TAC
[ENA]
¢þ
>WENV170074560
CDZT01000026
[CDZT] gut metagenome; human stools
675
750
+
Val
TAC
[ENA]
¢þ
>WENV170075650
CDZT01041540
[CDZT] gut metagenome; human stools
27986
28061
+
Val
TAC
[ENA]
¢þ
>WENV170077857
CDZV01000025
[CDZV] gut metagenome; human stools
151
226
+
Val
TAC
[ENA]
¢þ
>W09126897
ACKP02000002
Bacillota
Selenomonas sputigena ATCC 35185 [ACKP]
652
727
+
Val
TAC
[ENA]
¡û
>C181156433
CP027569
Bacillota
Megasphaera elsdenii NCIMB702410 [CP027569]
1234957
1235032
+
Val
TAC
-
¡û
>C181156465
CP027569
Bacillota
Megasphaera elsdenii NCIMB702410 [CP027569]
885961
885886
-
Val
TAC
-
¡û
>C181156499
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
1051033
1051108
+
Val
TAC
-
¡û
>C181156538
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
705070
704995
-
Val
TAC
-
¡û
>C181178695
CP029462
Bacillota
Megasphaera stantonii AJH120 [CP029462]
1262554
1262479
-
Val
TAC
-
¡û
>C181178715
CP029462
Bacillota
Megasphaera stantonii AJH120 [CP029462]
664165
664090
-
Val
TAC
-
¡û
>W141563580
JIAC01000001
Bacillota
Selenomonas ruminantium AC2024 [JIAC]
727998
728073
+
Val
TAC
[ENA]
¡û
>W141563604
JIAC01000001
Bacillota
Selenomonas ruminantium AC2024 [JIAC]
1141204
1141279
+
Val
TAC
[ENA]
¡û
>W141731550
JNJF01000007
Bacillota
Selenomonas sp. FC4001 [JNJF]
633
708
+
Val
TAC
[ENA]
¡û
>W141731563
JNJF01000008
Bacillota
Selenomonas sp. FC4001 [JNJF]
61661
61736
+
Val
TAC
[ENA]
¡û
>W141732760
JNKI01000012
Bacillota
Selenomonas sp. ND2010 [JNKI]
69599
69674
+
Val
TAC
[ENA]
¡û
>W141732798
JNKI01000048
Bacillota
Selenomonas sp. ND2010 [JNKI]
567
642
+
Val
TAC
[ENA]
¡û
>W1810272731
PSNP01000022
Bacillota
Megasphaera stantonii AJH120 [PSNP]
16320
16395
+
Val
TAC
[ENA]
¡û
>W1810272750
PSNP01000030
Bacillota
Megasphaera stantonii AJH120 [PSNP]
9953
10028
+
Val
TAC
[ENA]
¡û
>W1610931723
LUGJ01000011
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
38131
38056
-
Val
TAC
[ENA]
¡û
>W1610931751
LUGJ01000026
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
195
270
+
Val
TAC
[ENA]
¡û
>WENV083273
BAAX01010820
Gut microbiome of Human (healthy human sample F2-V, Adult, Male)
614
537
-
Val
TAC
[ENA]
>W1710580068
FPJA01000007
Bacillota
Selenomonas ruminantium [FPJA]
91971
91896
-
Val
TAC
[ENA]
¡û
>W1710580079
FPJA01000010
Bacillota
Selenomonas ruminantium [FPJA]
165388
165313
-
Val
TAC
[ENA]
¡û
>W1710590539
FRBC01000002
Bacillota
Selenomonas ruminantium [FRBC]
137976
137901
-
Val
TAC
[ENA]
¡û
>W1710590545
FRBC01000005
Bacillota
Selenomonas ruminantium [FRBC]
557
632
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK