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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293023 (67 seq.)
>W131010409
AHYM01000001
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
5845
5920
+
Arg
ACG
[ENA]
¡û
>W131037536
AMFD01000032
Bacillota
Lactococcus garvieae I113 [AMFD]
36
111
+
Arg
ACG
[ENA]
¡û
>W131037579
AMFE01000086
Bacillota
Lactococcus garvieae Tac2 [AMFE]
403
328
-
Arg
ACG
[ENA]
¡û
>W131044525
AMQS01000063
Bacillota
Lactococcus garvieae DCC43 [AMQS]
35
110
+
Arg
ACG
[ENA]
¡û
>W1711006255
LQOE01000087
Bacillota
Lactococcus sp. DD01 [LQOE]
29081
29154
+
Arg
ACG
[ENA]
¡û
>W1711006258
LQOE01000104
Bacillota
Lactococcus sp. DD01 [LQOE]
6710
6635
-
Arg
ACG
[ENA]
¡û
>W1711228315
LXWL01000008
Bacillota
Lactococcus garvieae [LXWL]
71954
71879
-
Arg
ACG
[ENA]
¡û
>W1711228326
LXWL01000009
Bacillota
Lactococcus garvieae [LXWL]
210345
210272
-
Arg
ACG
[ENA]
¡û
>W131202439
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
1052
1127
+
Arg
ACG
[ENA]
¡û
>W1711744875
MUIZ01000005
Bacillota
Lactococcus petauri 159469 [MUIZ]
196790
196717
-
Arg
ACG
[ENA]
¡û
>W1711744885
MUIZ01000011
Bacillota
Lactococcus petauri 159469 [MUIZ]
142
217
+
Arg
ACG
[ENA]
¡û
>W1711942749
NBBK01000002
Bacillota
Lactococcus garvieae [NBBK]
26136
26061
-
Arg
ACG
[ENA]
¡û
>W1711942785
NBBK01000014
Bacillota
Lactococcus garvieae [NBBK]
69026
68951
-
Arg
ACG
[ENA]
¡û
>W131010446
AHYM01000013
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
71775
71702
-
Arg
ACG
[ENA]
¡û
>W131037519
AMFD01000013
Bacillota
Lactococcus garvieae I113 [AMFD]
66239
66166
-
Arg
ACG
[ENA]
¡û
>W131037555
AMFE01000022
Bacillota
Lactococcus garvieae Tac2 [AMFE]
4165
4092
-
Arg
ACG
[ENA]
¡û
>W131044485
AMQS01000005
Bacillota
Lactococcus garvieae DCC43 [AMQS]
68082
68009
-
Arg
ACG
[ENA]
¡û
>W131202422
ASWT01000002
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
30332
30405
+
Arg
ACG
[ENA]
¡û
>WENV180455504
OBXO01006192
[OBXO] human gut metagenome; faeces
1717
1642
-
Arg
ACG
[ENA]
¢þ
>W141096204
AVFE01000015
Bacillota
Lactococcus garvieae TRF1 [AVFE]
15940
15867
-
Arg
ACG
[ENA]
¡û
>W141096216
AVFE01000017
Bacillota
Lactococcus garvieae TRF1 [AVFE]
26087
26162
+
Arg
ACG
[ENA]
¡û
>W141238091
BBJW01000010
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
65571
65498
-
Arg
ACG
[ENA]
¡û
>W141238098
BBJW01000023
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
15
90
+
Arg
ACG
[ENA]
¡û
>WENV182518967
OIWP01003393
[OIWP] human gut metagenome; faeces
1716
1643
-
Arg
ACG
[ENA]
¢þ
>WENV183179514
OLPH01005461
[OLPH] human gut metagenome; faeces
5160
5087
-
Arg
ACG
[ENA]
¢þ
>WENV183511400
OMJG01000186
[OMJG] food metagenome; Cotija cheese
45920
45993
+
Arg
ACG
[ENA]
¢þ
>WENV170001735
AGFS01136596
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
58
131
+
Arg
ACG
[ENA]
¢þ
>WENV170547748
CXTS01000088
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
5479
5552
+
Arg
ACG
[ENA]
¢þ
>WENV170547767
CXTS01000587
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
474
399
-
Arg
ACG
[ENA]
¢þ
>WENV170547795
CXTS01000729
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
76
1
-
Arg
ACG
[ENA]
¢þ
>WENV170548305
CXUD01000806
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
111
186
+
Arg
ACG
[ENA]
¢þ
>WENV170548329
CXUD01001603
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
314
241
-
Arg
ACG
[ENA]
¢þ
>WENV170549683
CXVH01000104
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
2528
2601
+
Arg
ACG
[ENA]
¢þ
>WENV170549804
CXVI01001354
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
933
858
-
Arg
ACG
[ENA]
¢þ
>WENV170549819
CXVI01002099
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
59
132
+
Arg
ACG
[ENA]
¢þ
>C181001710
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1391692
1391765
+
Arg
ACG
-
¡û
>C181001719
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1624105
1624180
+
Arg
ACG
-
¡û
>C191044540
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1791813
1791740
-
Arg
ACG
-
¡û
>C191044549
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1582003
1581928
-
Arg
ACG
-
¡û
>W1910583240
JXJV01000004
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
48475
48548
+
Arg
ACG
[ENA]
¡û
>W1910641566
LTDA01000016
Bacillota
Lactococcus garvieae KS1546 [LTDA]
23220
23145
-
Arg
ACG
[ENA]
¡û
>W1910641578
LTDA01000020
Bacillota
Lactococcus garvieae KS1546 [LTDA]
29130
29203
+
Arg
ACG
[ENA]
¡û
>W1810907554
QVHV01000002
Bacillota
Lactococcus petauri AM13-9 [QVHV]
193854
193781
-
Arg
ACG
[ENA]
¡û
>W1810907568
QVHV01000008
Bacillota
Lactococcus petauri AM13-9 [QVHV]
68
143
+
Arg
ACG
[ENA]
¡û
>W1510060212
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
1349127
1349200
+
Arg
ACG
[ENA]
¡û
>W1510060329
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
1349127
1349200
+
Arg
ACG
[ENA]
¡û
>WENV11101807
AGFS01136596
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
58
131
+
Arg
ACG
[ENA]
¡û
>C11112710
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1776015
1775942
-
Arg
ACG
[Ensembl]
¡û
>C11112719
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1565076
1565001
-
Arg
ACG
[Ensembl]
¡û
>C11112770
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1789844
1789771
-
Arg
ACG
[Ensembl]
¡û
>C11112779
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1579970
1579895
-
Arg
ACG
[Ensembl]
¡û
>W1511314666
JPUJ01000002
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
135591
135518
-
Arg
ACG
[ENA]
¡û
>W1511314694
JPUJ01000035
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
15
90
+
Arg
ACG
[ENA]
¡û
>W11157446
AFCC01000013
Bacillota
Lactococcus garvieae 21881 [AFCC]
15
90
+
Arg
ACG
[ENA]
¡û
>W11157468
AFCC01000064
Bacillota
Lactococcus garvieae 21881 [AFCC]
1678
1605
-
Arg
ACG
[ENA]
¡û
>W11157482
AFCD01000004
Bacillota
Lactococcus garvieae 8831 [AFCD]
15
90
+
Arg
ACG
[ENA]
¡û
>W11157502
AFCD01000042
Bacillota
Lactococcus garvieae 8831 [AFCD]
51338
51265
-
Arg
ACG
[ENA]
¡û
>W11162743
AFHF01000005
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
48585
48658
+
Arg
ACG
[ENA]
¡û
>W11162769
AFHF01000018
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
31844
31769
-
Arg
ACG
[ENA]
¡û
>W121016411
AGQY01000134
Bacillota
Lactococcus garvieae LG9 [AGQY]
767
692
-
Arg
ACG
[ENA]
¡û
>W121081207
AKFO01000012
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
23233
23158
-
Arg
ACG
[ENA]
¡û
>W121081189
AKFO01000004
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
28690
28763
+
Arg
ACG
[ENA]
¡û
>W1610856905
LQOE01000087
Bacillota
Lactococcus sp. DD01 [LQOE]
29081
29154
+
Arg
ACG
[ENA]
¡û
>W1610856908
LQOE01000104
Bacillota
Lactococcus sp. DD01 [LQOE]
6710
6635
-
Arg
ACG
[ENA]
¡û
>W1611012232
LXWL01000008
Bacillota
Lactococcus garvieae [LXWL]
71954
71879
-
Arg
ACG
[ENA]
¡û
>W1611012243
LXWL01000009
Bacillota
Lactococcus garvieae [LXWL]
210345
210272
-
Arg
ACG
[ENA]
¡û
>W1710568168
FOTJ01000005
Bacillota
Lactococcus garvieae [FOTJ]
65539
65466
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK