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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293056 (30 seq.)
>C171074590
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
842488
842563
+
Ala
TGC
-
¡û
>C171074606
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
2627834
2627759
-
Ala
TGC
-
¡û
>C171074612
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
2053792
2053717
-
Ala
TGC
-
¡û
>C171074642
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
842475
842550
+
Ala
TGC
-
¡û
>C171074658
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
2583481
2583406
-
Ala
TGC
-
¡û
>C171074664
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
2009352
2009277
-
Ala
TGC
-
¡û
>C171074694
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
839006
839081
+
Ala
TGC
-
¡û
>C171074710
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
2598725
2598650
-
Ala
TGC
-
¡û
>C171074716
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
2027842
2027767
-
Ala
TGC
-
¡û
>C171074746
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
842489
842564
+
Ala
TGC
-
¡û
>C171074762
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
2627835
2627760
-
Ala
TGC
-
¡û
>C171074768
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
2053793
2053718
-
Ala
TGC
-
¡û
>C171074798
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
832616
832691
+
Ala
TGC
-
¡û
>C171074814
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
2598993
2598918
-
Ala
TGC
-
¡û
>C171074820
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
2029573
2029498
-
Ala
TGC
-
¡û
>WENV180354095
OBLQ011379640
[OBLQ] soil metagenome; soil
103
178
+
Ala
TGC
[ENA]
¢þ
>WENV180648272
OCSI01151225
[OCSI] metagenome; diffuse fluid
136
61
-
Ala
TGC
[ENA]
¢þ
>WENV181297320
OFHK01028661
[OFHK] soil metagenome; Clay
1106
1031
-
Ala
TGC
[ENA]
¢þ
>WENV181407228
OGCG01011097
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
399
474
+
Ala
TGC
[ENA]
¢þ
>WENV183674330
ORJL011374967
[ORJL] groundwater metagenome; groundwater
368
293
-
Ala
TGC
[ENA]
¢þ
>WENV183686442
ORMF011001748
[ORMF] groundwater metagenome; groundwater
215
290
+
Ala
TGC
[ENA]
¢þ
>WENV170002536
AGTN01060572
[AGTN] bioreactor metagenome; poplar biomass
384
309
-
Ala
TGC
[ENA]
¢þ
>C151004010
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
835250
835325
+
Ala
TGC
[Ensembl]
¡û
>C151004026
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
2601583
2601508
-
Ala
TGC
[Ensembl]
¡û
>C151004032
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
2029615
2029540
-
Ala
TGC
[Ensembl]
¡û
>C151004114
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
832458
832533
+
Ala
TGC
[Ensembl]
¡û
>C151004120
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
1401783
1401858
+
Ala
TGC
[Ensembl]
¡û
>C151004137
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2627842
2627767
-
Ala
TGC
[Ensembl]
¡û
>ENV002351
AY934050
Environmental sample from ENV division of INSDC
277
352
+
Ala
TGC
[ENA]
>ENV002357
AY934053
Environmental sample from ENV division of INSDC
279
354
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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