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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293195 (95 seq.)
>W1711718004
MTHC01000003
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
108274
108347
+
Arg
TCT
[ENA]
¡û
>C171096217
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
1955653
1955580
-
Arg
TCT
-
¡û
>WENV180698054
ODDE01025288
[ODDE] human metagenome; G_DNA_Supragingival plaque
366
441
+
Arg
TCT
[ENA]
¢þ
>WENV180727308
ODGU01004112
[ODGU] human metagenome; G_DNA_Supragingival plaque
4102
4177
+
Arg
TCT
[ENA]
¢þ
>WENV180728578
ODGU01066212
[ODGU] human metagenome; G_DNA_Supragingival plaque
572
497
-
Arg
TCT
[ENA]
¢þ
>WENV180731953
ODGW01046027
[ODGW] human metagenome; G_DNA_Supragingival plaque
276
201
-
Arg
TCT
[ENA]
¢þ
>WENV180734080
ODGZ01002477
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1208
1283
+
Arg
TCT
[ENA]
¢þ
>WENV180734559
ODGZ01012678
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1496
1421
-
Arg
TCT
[ENA]
¢þ
>WENV180735568
ODHB01000036
[ODHB] human metagenome; G_DNA_Supragingival plaque
5944
6019
+
Arg
TCT
[ENA]
¢þ
>WENV180736427
ODHB01050527
[ODHB] human metagenome; G_DNA_Supragingival plaque
273
348
+
Arg
TCT
[ENA]
¢þ
>WENV180749943
ODHS01000149
[ODHS] human metagenome; G_DNA_Supragingival plaque
50769
50844
+
Arg
TCT
[ENA]
¢þ
>WENV180754858
ODHU01001822
[ODHU] human metagenome; G_DNA_Supragingival plaque
3847
3772
-
Arg
TCT
[ENA]
¢þ
>WENV180776915
ODIK01223833
[ODIK] human metagenome; G_DNA_Tongue dorsum
205
130
-
Arg
TCT
[ENA]
¢þ
>WENV180777169
ODIL01000217
[ODIL] human metagenome; G_DNA_Supragingival plaque
17513
17438
-
Arg
TCT
[ENA]
¢þ
>WENV180778635
ODIM01026057
[ODIM] human metagenome; G_DNA_Supragingival plaque
381
456
+
Arg
TCT
[ENA]
¢þ
>WENV180781698
ODIP01002162
[ODIP] human metagenome; G_DNA_Supragingival plaque
1462
1537
+
Arg
TCT
[ENA]
¢þ
>WENV180789054
ODIS01213827
[ODIS] human metagenome; G_DNA_Supragingival plaque
88
13
-
Arg
TCT
[ENA]
¢þ
>WENV180796687
ODJB01010065
[ODJB] human metagenome; G_DNA_Supragingival plaque
889
964
+
Arg
TCT
[ENA]
¢þ
>WENV180801419
ODJD01029519
[ODJD] human metagenome; G_DNA_Supragingival plaque
681
756
+
Arg
TCT
[ENA]
¢þ
>WENV180804630
ODJG01007760
[ODJG] human metagenome; G_DNA_Supragingival plaque
2855
2930
+
Arg
TCT
[ENA]
¢þ
>WENV180805143
ODJG01072513
[ODJG] human metagenome; G_DNA_Supragingival plaque
2
77
+
Arg
TCT
[ENA]
¢þ
>WENV180813696
ODJO01001802
[ODJO] human metagenome; G_DNA_Supragingival plaque
7764
7689
-
Arg
TCT
[ENA]
¢þ
>WENV180822919
ODJW01000679
[ODJW] human metagenome; G_DNA_Supragingival plaque
5934
6009
+
Arg
TCT
[ENA]
¢þ
>WENV180823322
ODJW01018383
[ODJW] human metagenome; G_DNA_Supragingival plaque
494
419
-
Arg
TCT
[ENA]
¢þ
>WENV180824485
ODJX01010069
[ODJX] human metagenome; G_DNA_Supragingival plaque
866
791
-
Arg
TCT
[ENA]
¢þ
>WENV180833319
ODKC01029509
[ODKC] human metagenome; G_DNA_Supragingival plaque
81
6
-
Arg
TCT
[ENA]
¢þ
>WENV180833802
ODKD01000307
[ODKD] human metagenome; G_DNA_Supragingival plaque
15501
15426
-
Arg
TCT
[ENA]
¢þ
>WENV180834230
ODKD01007008
[ODKD] human metagenome; G_DNA_Supragingival plaque
1835
1760
-
Arg
TCT
[ENA]
¢þ
>WENV180835817
ODKE01014604
[ODKE] human metagenome; G_DNA_Supragingival plaque
1507
1432
-
Arg
TCT
[ENA]
¢þ
>WENV180843887
ODKN01016090
[ODKN] human metagenome; G_DNA_Supragingival plaque
1354
1429
+
Arg
TCT
[ENA]
¢þ
>WENV180846147
ODKT01006030
[ODKT] human metagenome; G_DNA_Supragingival plaque
3562
3637
+
Arg
TCT
[ENA]
¢þ
>WENV180846799
ODKT01023654
[ODKT] human metagenome; G_DNA_Supragingival plaque
1489
1414
-
Arg
TCT
[ENA]
¢þ
>WENV180847714
ODKT01140605
[ODKT] human metagenome; G_DNA_Supragingival plaque
355
430
+
Arg
TCT
[ENA]
¢þ
>WENV180859233
ODLD01000098
[ODLD] human metagenome; G_DNA_Supragingival plaque
49002
48927
-
Arg
TCT
[ENA]
¢þ
>WENV180880724
ODLZ01052437
[ODLZ] human metagenome; G_DNA_Tongue dorsum
480
555
+
Arg
TCT
[ENA]
¢þ
>WENV180889772
ODMN01135704
[ODMN] human metagenome; G_DNA_Supragingival plaque
78
3
-
Arg
TCT
[ENA]
¢þ
>WENV180922845
ODTJ01013519
[ODTJ] human metagenome; G_DNA_Supragingival plaque
1292
1217
-
Arg
TCT
[ENA]
¢þ
>WENV180924467
ODTK01005558
[ODTK] human metagenome; G_DNA_Supragingival plaque
2481
2556
+
Arg
TCT
[ENA]
¢þ
>WENV180927797
ODTM01004051
[ODTM] human metagenome; G_DNA_Supragingival plaque
1799
1724
-
Arg
TCT
[ENA]
¢þ
>WENV180927826
ODTM01004662
[ODTM] human metagenome; G_DNA_Supragingival plaque
409
484
+
Arg
TCT
[ENA]
¢þ
>WENV180933333
ODTR01000032
[ODTR] human metagenome; G_DNA_Supragingival plaque
23530
23455
-
Arg
TCT
[ENA]
¢þ
>WENV180934389
ODTS01000006
[ODTS] human metagenome; G_DNA_Subgingival plaque
23117
23042
-
Arg
TCT
[ENA]
¢þ
>WENV180938402
ODTX01001819
[ODTX] human metagenome; G_DNA_Supragingival plaque
7403
7328
-
Arg
TCT
[ENA]
¢þ
>WENV180938968
ODTX01011030
[ODTX] human metagenome; G_DNA_Supragingival plaque
2506
2431
-
Arg
TCT
[ENA]
¢þ
>WENV180944380
ODUC01015569
[ODUC] human metagenome; G_DNA_Supragingival plaque
2413
2488
+
Arg
TCT
[ENA]
¢þ
>WENV180958133
ODUL01000541
[ODUL] human metagenome; G_DNA_Supragingival plaque
4034
3959
-
Arg
TCT
[ENA]
¢þ
>WENV180963840
ODUO01000005
[ODUO] human metagenome; G_DNA_Supragingival plaque
66143
66218
+
Arg
TCT
[ENA]
¢þ
>WENV180972917
ODUW01000469
[ODUW] human metagenome; G_DNA_Supragingival plaque
423
498
+
Arg
TCT
[ENA]
¢þ
>WENV180973342
ODUW01003759
[ODUW] human metagenome; G_DNA_Supragingival plaque
1907
1832
-
Arg
TCT
[ENA]
¢þ
>WENV180980547
ODVE01000450
[ODVE] human metagenome; G_DNA_Supragingival plaque
5047
5122
+
Arg
TCT
[ENA]
¢þ
>WENV180982549
ODVF01000082
[ODVF] human metagenome; G_DNA_Supragingival plaque
51582
51507
-
Arg
TCT
[ENA]
¢þ
>WENV180987359
ODVK01017482
[ODVK] human metagenome; G_DNA_Supragingival plaque
399
474
+
Arg
TCT
[ENA]
¢þ
>WENV181002113
ODVX01000022
[ODVX] human metagenome; G_DNA_Supragingival plaque
120022
119947
-
Arg
TCT
[ENA]
¢þ
>WENV181007725
ODWE01000533
[ODWE] human metagenome; G_DNA_Supragingival plaque
6980
7055
+
Arg
TCT
[ENA]
¢þ
>WENV181008855
ODWE01016409
[ODWE] human metagenome; G_DNA_Supragingival plaque
1489
1414
-
Arg
TCT
[ENA]
¢þ
>WENV181008964
ODWE01021495
[ODWE] human metagenome; G_DNA_Supragingival plaque
1489
1414
-
Arg
TCT
[ENA]
¢þ
>WENV181012720
ODWK01009894
[ODWK] human metagenome; G_DNA_Supragingival plaque
477
552
+
Arg
TCT
[ENA]
¢þ
>WENV181020265
ODWU01094449
[ODWU] human metagenome; G_DNA_Supragingival plaque
100
175
+
Arg
TCT
[ENA]
¢þ
>WENV181029893
ODXF01008437
[ODXF] human metagenome; G_DNA_Supragingival plaque
1220
1145
-
Arg
TCT
[ENA]
¢þ
>WENV181049719
ODYD01001627
[ODYD] human metagenome; G_DNA_Supragingival plaque
7797
7722
-
Arg
TCT
[ENA]
¢þ
>WENV181050173
ODYD01007817
[ODYD] human metagenome; G_DNA_Supragingival plaque
3137
3062
-
Arg
TCT
[ENA]
¢þ
>WENV181050339
ODYD01013979
[ODYD] human metagenome; G_DNA_Supragingival plaque
11
86
+
Arg
TCT
[ENA]
¢þ
>WENV181063166
ODYP01000154
[ODYP] human metagenome; G_DNA_Supragingival plaque
48048
47973
-
Arg
TCT
[ENA]
¢þ
>WENV181067652
ODZI01034814
[ODZI] human metagenome; G_DNA_Supragingival plaque
720
795
+
Arg
TCT
[ENA]
¢þ
>WENV181070589
OEAE01003716
[OEAE] human metagenome; G_DNA_Supragingival plaque
359
434
+
Arg
TCT
[ENA]
¢þ
>WENV181070629
OEAE01004557
[OEAE] human metagenome; G_DNA_Supragingival plaque
2577
2502
-
Arg
TCT
[ENA]
¢þ
>WENV181070743
OEAE01008016
[OEAE] human metagenome; G_DNA_Supragingival plaque
418
493
+
Arg
TCT
[ENA]
¢þ
>WENV181076053
OEAP01001505
[OEAP] human metagenome; G_DNA_Supragingival plaque
3699
3774
+
Arg
TCT
[ENA]
¢þ
>WENV181078688
OEAS01000316
[OEAS] human metagenome; G_DNA_Supragingival plaque
17654
17579
-
Arg
TCT
[ENA]
¢þ
>WENV181078795
OEAS01000560
[OEAS] human metagenome; G_DNA_Supragingival plaque
3511
3586
+
Arg
TCT
[ENA]
¢þ
>WENV181082575
OEAV01000090
[OEAV] human metagenome; G_DNA_Supragingival plaque
3266
3341
+
Arg
TCT
[ENA]
¢þ
>WENV181091432
OEBC01032858
[OEBC] human metagenome; G_DNA_Supragingival plaque
965
890
-
Arg
TCT
[ENA]
¢þ
>WENV181108225
OEEI01150755
[OEEI] human metagenome; G_DNA_Supragingival plaque
158
83
-
Arg
TCT
[ENA]
¢þ
>WENV181121877
OEFL01026812
[OEFL] human metagenome; G_DNA_Supragingival plaque
531
456
-
Arg
TCT
[ENA]
¢þ
>WENV181137745
OEGJ01020179
[OEGJ] human metagenome; G_DNA_Supragingival plaque
770
845
+
Arg
TCT
[ENA]
¢þ
>WENV181143938
OEHM01028154
[OEHM] human metagenome; G_DNA_Supragingival plaque
247
172
-
Arg
TCT
[ENA]
¢þ
>WENV181146049
OEHQ01000626
[OEHQ] human metagenome; G_DNA_Supragingival plaque
11919
11844
-
Arg
TCT
[ENA]
¢þ
>WENV181146548
OEHQ01009183
[OEHQ] human metagenome; G_DNA_Supragingival plaque
1864
1789
-
Arg
TCT
[ENA]
¢þ
>WENV181152858
OEIA01008288
[OEIA] human metagenome; G_DNA_Supragingival plaque
1898
1823
-
Arg
TCT
[ENA]
¢þ
>WENV181156238
OEIE01006510
[OEIE] human metagenome; G_DNA_Supragingival plaque
740
815
+
Arg
TCT
[ENA]
¢þ
>WENV181156492
OEIE01021552
[OEIE] human metagenome; G_DNA_Supragingival plaque
722
647
-
Arg
TCT
[ENA]
¢þ
>WENV181159154
OEIH01067418
[OEIH] human metagenome; G_DNA_Supragingival plaque
155
230
+
Arg
TCT
[ENA]
¢þ
>WENV181160860
OEIK01047908
[OEIK] human metagenome; G_DNA_Supragingival plaque
234
309
+
Arg
TCT
[ENA]
¢þ
>WENV181177201
OEJS01000124
[OEJS] human metagenome; G_DNA_Supragingival plaque
7788
7713
-
Arg
TCT
[ENA]
¢þ
>WENV181178703
OEJT01000161
[OEJT] human metagenome; G_DNA_Supragingival plaque
1535
1610
+
Arg
TCT
[ENA]
¢þ
>WENV181181672
OEJV01000056
[OEJV] human metagenome; G_DNA_Supragingival plaque
56890
56815
-
Arg
TCT
[ENA]
¢þ
>WENV183508596
OMHE01002954
[OMHE] human oral metagenome; human oral
16
91
+
Arg
TCT
[ENA]
¢þ
>WENV183509347
OMHH01013188
[OMHH] human oral metagenome; human oral
4
79
+
Arg
TCT
[ENA]
¢þ
>C191173823
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
1161294
1161369
+
Arg
TCT
-
¡û
>C191210838
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
1157891
1157966
+
Arg
TCT
-
¡û
>C191214553
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
1156121
1156196
+
Arg
TCT
-
¡û
>C121002930
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
1173631
1173706
+
Arg
TCT
[Ensembl]
¡û
>W1610074472
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
1035125
1035050
-
Arg
TCT
[ENA]
¡û
>W1710071590
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
1035125
1035050
-
Arg
TCT
[ENA]
¡û
>W1710531791
FNPU01000007
Actinomycetota
Tessaracoccus flavus [FNPU]
143720
143647
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK