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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293273 (62 seq.)
>W1710906966
LNOK01000049
Bacteroidota
Elizabethkingia ursingii 4 [LNOK]
155003
155078
+
Gly
TCC
[ENA]
¡û
>C171048232
CP016376
Bacteroidota
Elizabethkingia meningoseptica G4076 [CP016376]
315802
315727
-
Gly
TCC
-
¡û
>W131188325
ASAN01000011
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [ASAN]
16232
16307
+
Gly
TCC
[ENA]
¡û
>W131241091
BARD01000015
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [BARD]
15608
15683
+
Gly
TCC
[ENA]
¡û
>WENV180008050
FLSB01002897
[FLSB] metagenome; saliva
27775
27848
+
Gly
TCC
[ENA]
¢þ
>WENV180697858
ODDE01007465
[ODDE] human metagenome; G_DNA_Supragingival plaque
246
319
+
Gly
TCC
[ENA]
¢þ
>WENV180717933
ODGE01012414
[ODGE] human metagenome; G_DNA_Buccal mucosa
653
726
+
Gly
TCC
[ENA]
¢þ
>WENV180734156
ODGZ01003220
[ODGZ] human metagenome; G_DNA_Supragingival plaque
325
252
-
Gly
TCC
[ENA]
¢þ
>WENV180758986
ODHY01000039
[ODHY] human metagenome; G_DNA_Buccal mucosa
45142
45069
-
Gly
TCC
[ENA]
¢þ
>W141074330
ASYJ01000001
Bacteroidota
Elizabethkingia anophelis NUH6 [ASYJ]
102244
102169
-
Gly
TCC
[ENA]
¡û
>WENV180794047
ODIY01000539
[ODIY] human metagenome; G_DNA_Buccal mucosa
776
703
-
Gly
TCC
[ENA]
¢þ
>WENV180853251
ODKW01050784
[ODKW] human metagenome; G_DNA_Tongue dorsum
242
315
+
Gly
TCC
[ENA]
¢þ
>WENV180858515
ODLC01009356
[ODLC] human metagenome; G_DNA_Tongue dorsum
1904
1831
-
Gly
TCC
[ENA]
¢þ
>WENV180864797
ODLI01000017
[ODLI] human metagenome; G_DNA_Buccal mucosa
14503
14430
-
Gly
TCC
[ENA]
¢þ
>WENV180937125
ODTV01016690
[ODTV] human metagenome; G_DNA_Buccal mucosa
225
298
+
Gly
TCC
[ENA]
¢þ
>WENV180947492
ODUF01011608
[ODUF] human metagenome; G_DNA_Supragingival plaque
217
144
-
Gly
TCC
[ENA]
¢þ
>WENV181027627
ODXD01017622
[ODXD] human metagenome; G_DNA_Buccal mucosa
688
615
-
Gly
TCC
[ENA]
¢þ
>WENV181057362
ODYL01000079
[ODYL] human metagenome; G_DNA_Tongue dorsum
1529
1456
-
Gly
TCC
[ENA]
¢þ
>WENV181068039
ODZI01104556
[ODZI] human metagenome; G_DNA_Supragingival plaque
259
332
+
Gly
TCC
[ENA]
¢þ
>WENV181085733
OEAX01047369
[OEAX] human metagenome; G_DNA_Tongue dorsum
190
263
+
Gly
TCC
[ENA]
¢þ
>WENV181119752
OEFJ01000051
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
244
317
+
Gly
TCC
[ENA]
¢þ
>WENV181158219
OEIH01000031
[OEIH] human metagenome; G_DNA_Supragingival plaque
517
444
-
Gly
TCC
[ENA]
¢þ
>WENV181181278
OEJU01015742
[OEJU] human metagenome; G_DNA_Supragingival plaque
951
1024
+
Gly
TCC
[ENA]
¢þ
>W141168429
AXUZ01000011
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
184
259
+
Gly
TCC
[ENA]
¡û
>W141168432
AXUZ01000011
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
606
681
+
Gly
TCC
[ENA]
¡û
>WENV181731716
OGQD01002631
[OGQD] human gut metagenome; faeces
404
477
+
Gly
TCC
[ENA]
¢þ
>WENV170010833
APMI01030622
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3488
3413
-
Gly
TCC
[ENA]
¢þ
>WENV170020787
BBPE01028633
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
339
414
+
Gly
TCC
[ENA]
¢þ
>C181016516
CP014338
Bacteroidota
Elizabethkingia meningoseptica KC1913 [CP014338]
315802
315729
-
Gly
TCC
-
¡û
>C181074463
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
2168680
2168607
-
Gly
TCC
-
¡û
>C181074466
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
2168263
2168190
-
Gly
TCC
-
¡û
>C181092474
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
3372408
3372335
-
Gly
TCC
-
¡û
>C191111292
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
1890085
1890158
+
Gly
TCC
-
¡û
>C191115148
CP033912
Bacteroidota
Chryseobacterium shandongense H5143 [CP033912]
3060293
3060366
+
Gly
TCC
-
¡û
>C191115151
CP033912
Bacteroidota
Chryseobacterium shandongense H5143 [CP033912]
3060719
3060794
+
Gly
TCC
-
¡û
>C191115275
CP033915
Bacteroidota
Chryseobacterium shandongense G0207 [CP033915]
3356913
3356986
+
Gly
TCC
-
¡û
>C191115278
CP033915
Bacteroidota
Chryseobacterium shandongense G0207 [CP033915]
3357339
3357414
+
Gly
TCC
-
¡û
>C191115447
CP033918
Bacteroidota
Chryseobacterium sp. G0186 [CP033918]
2566979
2566906
-
Gly
TCC
-
¡û
>C191115450
CP033918
Bacteroidota
Chryseobacterium sp. G0186 [CP033918]
2566554
2566481
-
Gly
TCC
-
¡û
>C191115654
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
3092790
3092863
+
Gly
TCC
-
¡û
>C191115657
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
3093217
3093290
+
Gly
TCC
-
¡û
>C191115787
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
2427379
2427304
-
Gly
TCC
-
¡û
>C191115790
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
2426957
2426884
-
Gly
TCC
-
¡û
>C191181540
CP040694
Bacteroidota
Elizabethkingia sp. JS20170427COW [CP040694]
1553546
1553619
+
Gly
TCC
-
¡û
>C191210000
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
5109423
5109348
-
Gly
TCC
-
¡û
>C191210003
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
5109001
5108928
-
Gly
TCC
-
¡û
>W1910342466
FTQZ01000001
Bacteroidota
Elizabethkingia anophelis [FTQZ]
352640
352567
-
Gly
TCC
[ENA]
¡û
>W1911218375
NRQS01000001
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
193435
193508
+
Gly
TCC
[ENA]
¡û
>W1911218378
NRQS01000001
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
193857
193930
+
Gly
TCC
[ENA]
¡û
>W1911788783
QYCZ01000001
Bacteroidota
Bergeyella cardium 1 [QYCZ]
150779
150852
+
Gly
TCC
[ENA]
¡û
>W1810475426
QAJA01000099
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
1548
1475
-
Gly
TCC
[ENA]
¡û
>W1810475429
QAJA01000099
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
1126
1053
-
Gly
TCC
[ENA]
¡û
>W1810707192
QNFY01000004
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
203176
203103
-
Gly
TCC
[ENA]
¡û
>W1810707195
QNFY01000004
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
202746
202673
-
Gly
TCC
[ENA]
¡û
>W1610083526
CBYF010000024
Bacteroidota
Elizabethkingia anophelis [CBYF]
160343
160418
+
Gly
TCC
[ENA]
¡û
>W121086493
AKJY01000108
Bacteroidota
Chryseobacterium populi CF314 [AKJY]
5222
5295
+
Gly
TCC
[ENA]
¡û
>W121086496
AKJY01000108
Bacteroidota
Chryseobacterium populi CF314 [AKJY]
5649
5724
+
Gly
TCC
[ENA]
¡û
>C131004602
CP003605
Bacteroidota
Blattabacterium sp. [Blatta orientalis] str. Tarazona [CP003605]
179589
179664
+
Gly
TCC
[Ensembl]
¡û
>W1610765980
LNOK01000049
Bacteroidota
Elizabethkingia ursingii 4 [LNOK]
155003
155078
+
Gly
TCC
[ENA]
¡û
>W1610928970
LUDH01000002
Bacteroidota
Riemerella anatipestifer [LUDH]
38461
38386
-
Gly
TCC
[ENA]
¡û
>W1610929448
LUDU01000002
Bacteroidota
Riemerella anatipestifer [LUDU]
38521
38446
-
Gly
TCC
[ENA]
¡û
>W1710088543
CBYF010000024
Bacteroidota
Elizabethkingia anophelis [CBYF]
160343
160418
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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