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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293430 (29 seq.)
>W1712042582
NFLV01000010
Bacillota
Eubacterium sp. An11 [NFLV]
67458
67384
-
Lys
CTT
[ENA]
¡û
>C171019448
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1454167
1454242
+
Lys
CTT
-
¡û
>C171019527
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1453202
1453277
+
Lys
CTT
-
¡û
>W131082819
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
154159
154234
+
Lys
CTT
[ENA]
¡û
>w021384
AAVO02000005
Bacillota
Blautia obeum ATCC 29174 [AAVO]
37979
38056
+
Lys
CTT
[ENA]
¡û
>WENV180347602
OBLO01000709
[OBLO] metagenome; feces
7990
7918
-
Lys
CTT
[ENA]
¢þ
>WENV181533498
OGHR01001456
[OGHR] metagenome; Human gut stool
1376
1449
+
Lys
CTT
[ENA]
¢þ
>WENV181738490
OGQI01006367
[OGQI] human gut metagenome; faeces
2980
2907
-
Lys
CTT
[ENA]
¢þ
>WENV181974922
OHAC01000735
[OHAC] human gut metagenome; faeces
24894
24967
+
Lys
CTT
[ENA]
¢þ
>WENV182060690
OHES01021248
[OHES] human gut metagenome; feces
90
16
-
Lys
CTT
[ENA]
¢þ
>WENV182299599
OHWK01020920
[OHWK] human gut metagenome; feces
38
111
+
Lys
CTT
[ENA]
¢þ
>WENV182472190
OIPN01015187
[OIPN] human gut metagenome; human gut
40
113
+
Lys
CTT
[ENA]
¢þ
>WENV183099746
OLNF01016467
[OLNF] human gut metagenome; faeces
1102
1030
-
Lys
CTT
[ENA]
¢þ
>WENV183128184
OLNZ01003012
[OLNZ] human gut metagenome; faeces
2203
2275
+
Lys
CTT
[ENA]
¢þ
>WENV183140958
OLOJ01000523
[OLOJ] human gut metagenome; faeces
1574
1501
-
Lys
CTT
[ENA]
¢þ
>WENV183189890
OLPQ01018149
[OLPQ] human gut metagenome; faeces
308
380
+
Lys
CTT
[ENA]
¢þ
>WENV183203021
OLPY01000149
[OLPY] human gut metagenome; faeces
26618
26545
-
Lys
CTT
[ENA]
¢þ
>WENV183327338
OLWA01000501
[OLWA] human gut metagenome; faeces
29244
29317
+
Lys
CTT
[ENA]
¢þ
>WENV183524084
ONZT01000042
[ONZT] human gut metagenome; human gut
110183
110256
+
Lys
CTT
[ENA]
¢þ
>W141803766
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
106912
106837
-
Lys
CTT
[ENA]
¡û
>W1910874325
NDYH01000017
Bacillota
Finegoldia magna 09T408 [NDYH]
402
477
+
Lys
CTT
[ENA]
¡û
>W1810821433
QSFL01000004
Bacillota
Blautia obeum AM43-41 [QSFL]
140749
140676
-
Lys
CTT
[ENA]
¡û
>W1810865239
QTWS01000010
Bacillota
Blautia sp. AF19-10LB [QTWS]
674
601
-
Lys
CTT
[ENA]
¡û
>W1810905542
QVFD01000003
Bacillota
Coprococcus catus AM28-39 [QVFD]
201103
201030
-
Lys
CTT
[ENA]
¡û
>C151047024
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1453206
1453281
+
Lys
CTT
[Ensembl]
¡û
>C151047103
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1453206
1453281
+
Lys
CTT
[Ensembl]
¡û
>C161103928
FP929054
Bacillota
Blautia obeum A2-162 [FP929054]
139592
139667
+
Lys
CTT
-
¡û
>W1710605726
FWXH01000002
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
1022306
1022231
-
Lys
CTT
[ENA]
¡û
>W1710605761
FWXH01000020
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
45570
45645
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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