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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29345 (47 seq.)
>W1710853409
LLWQ01000154
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
3191
3102
-
Ser
CGA
[ENA]
¡û
>W1710889731
LNBC01000007
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
80287
80376
+
Ser
CGA
[ENA]
¡û
>W1712104764
NIPZ01000076
Alphaproteobacteria
Paracoccus yeei [NIPZ]
24852
24763
-
Ser
CGA
[ENA]
¡û
>W131158907
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
2450212
2450123
-
Ser
CGA
[ENA]
¡û
>W131214671
ATUJ01000009
Alphaproteobacteria
Paracoccus zeaxanthinifaciens ATCC 21588 [ATUJ]
31309
31220
-
Ser
CGA
[ENA]
¡û
>C016053
CP000490
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
992265
992176
-
Ser
CGA
[Ensembl]
¡û
>W141216630
AZVA01000006
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
2429
2340
-
Ser
CGA
[ENA]
¡û
>W141277314
JAEM01000027
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
14627
14538
-
Ser
CGA
[ENA]
¡û
>W141277343
JAEN01000002
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
91449
91360
-
Ser
CGA
[ENA]
¡û
>W141279585
JAGK01000026
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
46065
46154
+
Ser
CGA
[ENA]
¡û
>WENV170613081
FUWD012779497
[FUWD] metagenome; unknown
297
385
+
Ser
TGA
[ENA]
¢þ
>C181099796
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
1818518
1818429
-
Ser
CGA
-
¡û
>C181117169
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
1183943
1184032
+
Ser
CGA
-
¡û
>C181190840
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
2238122
2238033
-
Ser
CGA
-
¡û
>C181203423
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
1432905
1432816
-
Ser
CGA
-
¡û
>C191073607
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
389740
389651
-
Ser
CGA
-
¡û
>W09103034
AAIT01000001
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
310159
310070
-
Ser
CGA
[ENA]
¡û
>C191134413
CP035091
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
991986
991897
-
Ser
CGA
-
¡û
>W141558853
JHWH01000002
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
42660
42749
+
Ser
CGA
[ENA]
¡û
>W1910547072
FZNM01000004
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
29317
29228
-
Ser
CGA
[ENA]
¡û
>W1911397909
NWMQ01000008
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
96639
96728
+
Ser
CGA
[ENA]
¡û
>W1911698513
QNRC01000029
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
41853
41764
-
Ser
CGA
[ENA]
¡û
>W1911705501
QOKZ01000001
Alphaproteobacteria
Paracoccus alkanivorans 4·î2Æü [QOKZ]
729435
729346
-
Ser
CGA
[ENA]
¡û
>W1810235965
PPGA01000001
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
88832
88743
-
Ser
CGA
[ENA]
¡û
>W1810385248
PXNQ01000001
Alphaproteobacteria
Paracoccus methylarcula VKM B-2159 [PXNQ]
623889
623978
+
Ser
CGA
[ENA]
¡û
>W1810585318
QFCQ01000033
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
29295
29206
-
Ser
CGA
[ENA]
¡û
>W1810697138
QLUV01000016
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
16650
16561
-
Ser
CGA
[ENA]
¡û
>W1810750735
QOZU01000025
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
947
858
-
Ser
CGA
[ENA]
¡û
>W1810762336
QPML01000091
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
19813
19902
+
Ser
CGA
[ENA]
¡û
>W1810884860
QUMX01000017
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
83234
83145
-
Ser
CGA
[ENA]
¡û
>W1511348539
JRKN01000002
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
252841
252930
+
Ser
CGA
[ENA]
¡û
>W1511348602
JRKO01000013
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
19872
19961
+
Ser
CGA
[ENA]
¡û
>W1610716533
LLWQ01000154
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
3191
3102
-
Ser
CGA
[ENA]
¡û
>W1610750109
LNBC01000007
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
80287
80376
+
Ser
CGA
[ENA]
¡û
>W1710518461
FNEA01000006
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
12802
12713
-
Ser
CGA
[ENA]
¡û
>W1710521174
FNGE01000006
Alphaproteobacteria
Paracoccus chinensis [FNGE]
181591
181680
+
Ser
CGA
[ENA]
¡û
>W1710540945
FNXG01000002
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
865518
865607
+
Ser
CGA
[ENA]
¡û
>W1710547708
FODE01000041
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
3899
3810
-
Ser
CGA
[ENA]
¡û
>W1710555536
FOJO01000001
Alphaproteobacteria
Paracoccus halophilus [FOJO]
176
87
-
Ser
CGA
[ENA]
¡û
>W1710563605
FOPU01000048
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
9674
9585
-
Ser
CGA
[ENA]
¡û
>W1710571585
FOWA01000054
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
7241
7152
-
Ser
CGA
[ENA]
¡û
>W1710574680
FOYK01000006
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
221142
221231
+
Ser
CGA
[ENA]
¡û
>W1710581772
FPKI01000020
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
22351
22440
+
Ser
CGA
[ENA]
¡û
>W1710592385
FRCK01000005
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
177
88
-
Ser
CGA
[ENA]
¡û
>W1710596206
FTMK01000026
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
26182
26271
+
Ser
CGA
[ENA]
¡û
>W1710599538
FTOU01000006
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
84174
84263
+
Ser
CGA
[ENA]
¡û
>W1710608099
FXAQ01000001
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
304658
304747
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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