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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293559 (29 seq.)
>WENV180402749
OBRQ01043960
[OBRQ] human gut metagenome; ENVO:feces
116
41
-
Ala
TGC
[ENA]
¢þ
>WENV180490067
OBZT01003706
[OBZT] human gut metagenome; faeces
250
175
-
Ala
TGC
[ENA]
¢þ
>WENV180855250
ODKX01054869
[ODKX] human metagenome; G_DNA_Tongue dorsum
306
231
-
Ala
TGC
[ENA]
¢þ
>WENV180864663
ODLH01098089
[ODLH] human metagenome; G_DNA_Tongue dorsum
209
284
+
Ala
TGC
[ENA]
¢þ
>WENV180901865
ODOK01005694
[ODOK] human metagenome; G_DNA_Tongue dorsum
3056
2981
-
Ala
TGC
[ENA]
¢þ
>WENV180985523
ODVJ01007114
[ODVJ] human metagenome; G_DNA_Tongue dorsum
3441
3366
-
Ala
TGC
[ENA]
¢þ
>WENV181014464
ODWN01051719
[ODWN] human metagenome; G_DNA_Tongue dorsum
305
230
-
Ala
TGC
[ENA]
¢þ
>WENV181021960
ODWV01101858
[ODWV] human metagenome; G_DNA_Tongue dorsum
201
276
+
Ala
TGC
[ENA]
¢þ
>WENV181067361
ODZI01014706
[ODZI] human metagenome; G_DNA_Supragingival plaque
2182
2108
-
Ala
TGC
[ENA]
¢þ
>WENV181068884
ODZZ01004349
[ODZZ] human metagenome; G_DNA_Tongue dorsum
4074
3999
-
Ala
TGC
[ENA]
¢þ
>WENV181122558
OEFM01046741
[OEFM] marine metagenome; ENVO:00000569 for seawater
234
309
+
Ala
TGC
[ENA]
¢þ
>WENV181138910
OEGN01001467
[OEGN] human metagenome; G_DNA_Tongue dorsum
305
230
-
Ala
TGC
[ENA]
¢þ
>WENV181141479
OEGT01005818
[OEGT] human metagenome; G_DNA_Throat
3147
3072
-
Ala
TGC
[ENA]
¢þ
>WENV181168156
OEIU01182773
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
457
385
-
Ala
TGC
[ENA]
¢þ
>WENV181537805
OGHX01002289
[OGHX] metagenome; Human gut stool
342
417
+
Ala
TGC
[ENA]
¢þ
>WENV181732300
OGQD01022654
[OGQD] human gut metagenome; faeces
515
440
-
Ala
TGC
[ENA]
¢þ
>WENV182547178
OJBR01005074
[OJBR] seawater metagenome; Sea water
963
888
-
Ala
TGC
[ENA]
¢þ
>WENV183747429
PPCM01001916
[PPCM] marine sediment metagenome; marine sediment
4939
5014
+
Ala
TGC
[ENA]
¢þ
>WENV170607927
FUWD010871984
[FUWD] metagenome; unknown
92
167
+
Ala
TGC
[ENA]
¢þ
>C191001305
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
3344255
3344180
-
Ala
TGC
-
¡û
>C191001329
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
2858972
2858897
-
Ala
TGC
-
¡û
>C191001349
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
2857010
2856935
-
Ala
TGC
-
¡û
>C191001364
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
576717
576642
-
Ala
TGC
-
¡û
>C191001373
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
470943
470868
-
Ala
TGC
-
¡û
>SRA1031444
SRR035087.430869
454 Sequencing (SRP001808)
325
400
+
Ala
TGC
[SRA]
>SRA1031664
SRR035087.467446
454 Sequencing (SRP001808)
167
242
+
Ala
TGC
[SRA]
>SRA1050457
SRR035095.268101
454 Sequencing (SRP001816)
392
317
-
Ala
TGC
[SRA]
>W1610039851
AZSY01000003
Bacillota
Bacillus licheniformis LMG 17339 [AZSY]
1000456
1000528
+
Ala
TGC
[ENA]
¡û
>W1710036996
AZSY01000003
Bacillota
Bacillus licheniformis LMG 17339 [AZSY]
1000456
1000528
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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