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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293686 (35 seq.)
>W1711228868
LXWX01000117
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
13654
13579
-
Thr
CGT
[ENA]
¡û
>W131186384
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
288252
288177
-
Thr
CGT
[ENA]
¡û
>C004123
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
311605
311530
-
Thr
CGT
[Ensembl]
¡û
>C018878
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
70577
70502
-
Thr
CGT
[Ensembl]
¡û
>C018879
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
58307
58382
+
Thr
CGT
[Ensembl]
¡û
>WENV180308757
OBJR01172921
[OBJR] soil metagenome; soil
28
103
+
Thr
CGT
[ENA]
¢þ
>WENV180694609
OCZS012481642
[OCZS] soil metagenome; soil
151
76
-
Thr
CGT
[ENA]
¢þ
>WENV181166898
OEIU01004036
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5358
5433
+
Thr
CGT
[ENA]
¢þ
>WENV181166960
OEIU01004941
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5862
5937
+
Thr
CGT
[ENA]
¢þ
>WENV181234788
OFEU01008944
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
455
380
-
Thr
CGT
[ENA]
¢þ
>W08008849
ABLP01000004
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
119957
120032
+
Thr
CGT
[ENA]
¡û
>W141213971
AZSJ01000003
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
1682081
1682156
+
Thr
CGT
[ENA]
¡û
>WENV182409136
OIFG01002469
[OIFG] human gut metagenome; stool
1446
1371
-
Thr
CGT
[ENA]
¢þ
>WENV182412650
OIFV01002364
[OIFV] human gut metagenome; stool
412
487
+
Thr
CGT
[ENA]
¢þ
>WENV182962930
OKWP01000012
[OKWP] human gut metagenome; stool
202584
202659
+
Thr
CGT
[ENA]
¢þ
>WENV182966367
OKWV01001834
[OKWV] human gut metagenome; stool
605
680
+
Thr
CGT
[ENA]
¢þ
>WENV170709078
LNFM01000095
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
252019
251944
-
Thr
CGT
[ENA]
¢þ
>C181041842
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
283994
284069
+
Thr
CGT
-
¡û
>C181041890
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
287341
287416
+
Thr
CGT
-
¡û
>W09103856
AALA01000003
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
207470
207545
+
Thr
CGT
[ENA]
¡û
>W09104383
AALQ01000004
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
227328
227253
-
Thr
CGT
[ENA]
¡û
>W09107611
ABJR01000010
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
44974
45049
+
Thr
CGT
[ENA]
¡û
>W1910501733
FYAS01000031
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
98941
99016
+
Thr
CGT
[ENA]
¡û
>C09107920
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
1682146
1682071
-
Thr
CGT
[Ensembl]
¡û
>W1911219156
NRSI01000011
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
44360
44435
+
Thr
CGT
[ENA]
¡û
>W1911809182
QYYC01000040
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
44569
44644
+
Thr
CGT
[ENA]
¡û
>W1810068811
PDZR01000028
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
795
720
-
Thr
CGT
[ENA]
¡û
>W1810330557
PUIV01000005
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
4873
4798
-
Thr
CGT
[ENA]
¡û
>W1810679440
QKQS01000023
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
789675
789750
+
Thr
CGT
[ENA]
¡û
>W10112834
ADFI01000025
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
29568
29643
+
Thr
CGT
[ENA]
¡û
>C10110737
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
276776
276851
+
Thr
CGT
[Ensembl]
¡û
>W11116061
ADFI01000025
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
29568
29643
+
Thr
CGT
[ENA]
¡û
>C131000842
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
317402
317327
-
Thr
CGT
[Ensembl]
¡û
>WENV077771
AAFX01104366
Soil microbial communities from Minnesota Farm
239
316
+
Thr
CGT
[ENA]
>W1611012785
LXWX01000117
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
13654
13579
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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