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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293721 (53 seq.)
>W131235395
AULN01000019
Gammaproteobacteria
Luteimonas mephitis DSM 12574 [AULN]
126566
126490
-
Pro
GGG
[ENA]
¡û
>WENV181221678
OFCW01000787
[OFCW] microbial mat metagenome; Microbial Mat
2350
2274
-
Pro
GGG
[ENA]
¢þ
>W141149602
AWZR01000002
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
215142
215066
-
Pro
GGG
[ENA]
¡û
>WENV181852048
OGWF01003874
[OGWF] freshwater metagenome; freshwater
1057
981
-
Pro
GGG
[ENA]
¢þ
>W141207706
AZNZ01000007
Gammaproteobacteria
Pseudoxanthomonas sp. J31 [AZNZ]
119008
118932
-
Pro
GGG
[ENA]
¡û
>W141215602
AZUH01000003
Gammaproteobacteria
Pseudoxanthomonas suwonensis J42 [AZUH]
216720
216796
+
Pro
GGG
[ENA]
¡û
>W141216558
AZUZ01000001
Gammaproteobacteria
Pseudoxanthomonas suwonensis J47 [AZUZ]
272709
272785
+
Pro
GGG
[ENA]
¡û
>W141216658
AZVB01000001
Gammaproteobacteria
Pseudoxanthomonas sp. J35 [AZVB]
130016
129940
-
Pro
GGG
[ENA]
¡û
>W141274338
JAAN01000014
Gammaproteobacteria
Luteimonas huabeiensis HB2 [JAAN]
411791
411867
+
Pro
GGG
[ENA]
¡û
>W141277569
JAES01000001
Gammaproteobacteria
Pseudoxanthomonas suwonensis J43 [JAES]
224485
224561
+
Pro
GGG
[ENA]
¡û
>WENV183729036
PJTQ01002909
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1919
1843
-
Pro
GGG
[ENA]
¢þ
>WENV183731932
PJTU01000013
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
122418
122342
-
Pro
GGG
[ENA]
¢þ
>WENV183732065
PJTV01000005
[PJTV] soil metagenome; Soil enriched on wood chips: alkali lignin treatment
122418
122342
-
Pro
GGG
[ENA]
¢þ
>WENV183732390
PJTX01000093
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
30441
30365
-
Pro
GGG
[ENA]
¢þ
>WENV183733357
PJTY01001310
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
7649
7725
+
Pro
GGG
[ENA]
¢þ
>WENV183734055
PJTZ01000032
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
122418
122342
-
Pro
GGG
[ENA]
¢þ
>WENV183734819
PJUA01000031
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
121000
120924
-
Pro
GGG
[ENA]
¢þ
>WENV183735533
PJUB01000034
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
121000
120924
-
Pro
GGG
[ENA]
¢þ
>WENV183736106
PJUC01000029
[PJUC] soil metagenome; Soil enriched on filter paper
121000
120924
-
Pro
GGG
[ENA]
¢þ
>WENV183741584
PJUG01000101
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
18437
18361
-
Pro
GGG
[ENA]
¢þ
>WENV183741984
PJUH01000026
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
121179
121103
-
Pro
GGG
[ENA]
¢þ
>WENV183742773
PJUI01000151
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
467
391
-
Pro
GGG
[ENA]
¢þ
>WENV183743093
PJUJ01000030
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
121179
121103
-
Pro
GGG
[ENA]
¢þ
>WENV183743907
PJUK01000034
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
121179
121103
-
Pro
GGG
[ENA]
¢þ
>WENV183744644
PJUL01000042
[PJUL] feces metagenome; Chicken feces enriched on filter paper
121179
121103
-
Pro
GGG
[ENA]
¢þ
>WENV170573207
FLYJ01004648
[FLYJ] hot springs metagenome; Sediment
999
923
-
Pro
GGG
[ENA]
¢þ
>WENV170719692
LSQX01123420
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6249
6325
+
Pro
GGG
[ENA]
¢þ
>WENV170722285
LSQX01224050
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
20843
20767
-
Pro
GGG
[ENA]
¢þ
>WENV170727278
LTCX01011592
[LTCX] gut metagenome; intestine contents (feces)
49
125
+
Pro
GGG
[ENA]
¢þ
>C181021717
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
389988
389912
-
Pro
GGG
-
¡û
>C181180379
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
1407223
1407299
+
Pro
GGG
-
¡û
>C191139386
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
2334423
2334347
-
Pro
GGG
-
¡û
>C191165691
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
2212514
2212438
-
Pro
GGG
-
¡û
>W1911283690
NTJF01000008
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
9539
9615
+
Pro
GGG
[ENA]
¡û
>W1911283736
NTJG01000008
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
176731
176655
-
Pro
GGG
[ENA]
¡û
>W1911283798
NTJH01000031
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
13691
13615
-
Pro
GGG
[ENA]
¡û
>W1911405207
NWQL01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
442889
442965
+
Pro
GGG
[ENA]
¡û
>W1911405257
NWQM01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML03-0222 [NWQM]
332135
332211
+
Pro
GGG
[ENA]
¡û
>W1911405303
NWQN01000017
Gammaproteobacteria
Xanthomonadaceae bacterium NML75-0749 [NWQN]
91368
91292
-
Pro
GGG
[ENA]
¡û
>W1911405368
NWQO01000004
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0268 [NWQO]
48945
48869
-
Pro
GGG
[ENA]
¡û
>W1911405417
NWQP01000020
Gammaproteobacteria
Xanthomonadaceae bacterium NML71-0210 [NWQP]
44536
44612
+
Pro
GGG
[ENA]
¡û
>W1911405457
NWQQ01000020
Gammaproteobacteria
Xanthomonadaceae bacterium NML95-0200 [NWQQ]
107294
107370
+
Pro
GGG
[ENA]
¡û
>W1911405483
NWQR01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML08-0793 [NWQR]
445241
445165
-
Pro
GGG
[ENA]
¡û
>W1911405523
NWQS01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML120232 [NWQS]
75880
75804
-
Pro
GGG
[ENA]
¡û
>W1911405580
NWQT01000007
Gammaproteobacteria
Xanthomonadaceae bacterium NML07-0707 [NWQT]
4413
4337
-
Pro
GGG
[ENA]
¡û
>C11118136
CP002446
Gammaproteobacteria
Pseudoxanthomonas suwonensis 11-1 [CP002446]
1264893
1264969
+
Pro
GGG
[Ensembl]
¡û
>W1511582564
LASZ01000006
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
202968
203044
+
Pro
GGG
[ENA]
¡û
>W121110735
ALIP01000101
Gammaproteobacteria
Pseudoxanthomonas sp. GW2 [ALIP]
24542
24466
-
Pro
GGG
[ENA]
¡û
>W1610207403
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1241710
1241634
-
Pro
GGG
[ENA]
¡û
>W1610547667
JUKH01000016
Gammaproteobacteria
Luteimonas abyssi [JUKH]
29335
29259
-
Pro
GGG
[ENA]
¡û
>W1710208037
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1241710
1241634
-
Pro
GGG
[ENA]
¡û
>W1710595298
FTLW01000001
Gammaproteobacteria
Lysobacter tolerans [FTLW]
349086
349162
+
Pro
GGG
[ENA]
¡û
>W1710650912
JUKH01000016
Gammaproteobacteria
Luteimonas abyssi [JUKH]
29335
29259
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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