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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293747 (30 seq.)
>W1711501134
MKRG01000040
Alphaproteobacteria
Afipia sp. 62-7 [MKRG]
751
826
+
Lys
CTT
[ENA]
¡û
>W1711502265
MKSM01000128
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
12411
12336
-
Lys
CTT
[ENA]
¡û
>W1711795382
MWPQ01000045
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
13167
13092
-
Lys
CTT
[ENA]
¡û
>C014942
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
2990028
2989953
-
Lys
CTT
[Ensembl]
¡û
>C015376
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
2555306
2555231
-
Lys
CTT
[Ensembl]
¡û
>w012986
AAMY01000004
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
182035
182110
+
Lys
CTT
[ENA]
¡û
>WENV180020483
FTCZ01004614
[FTCZ] metagenome; soil
250
325
+
Lys
CTT
[ENA]
¢þ
>W141007495
AGWY01000008
Alphaproteobacteria
Afipia clevelandensis ATCC 49720 [AGWY]
194346
194271
-
Lys
CTT
[ENA]
¡û
>W141007546
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
4095100
4095175
+
Lys
CTT
[ENA]
¡û
>WENV180094629
MTBK01019284
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
290
365
+
Lys
CTT
[ENA]
¢þ
>WENV181092993
OEBK01139708
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
232
307
+
Lys
CTT
[ENA]
¢þ
>WENV181167359
OEIU01021912
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
611
536
-
Lys
CTT
[ENA]
¢þ
>W08007829
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
1284614
1284689
+
Lys
CTT
[ENA]
¡û
>W141261708
CCAZ010000046
Alphaproteobacteria
Afipia felis [CCAZ]
38262
38337
+
Lys
CTT
[ENA]
¡û
>WENV183729231
PJTQ01014231
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
910
835
-
Lys
CTT
[ENA]
¢þ
>WENV183736670
PJUC01038404
[PJUC] soil metagenome; Soil enriched on filter paper
87
12
-
Lys
CTT
[ENA]
¢þ
>WENV183745040
PJUL01001545
[PJUL] feces metagenome; Chicken feces enriched on filter paper
2004
1929
-
Lys
CTT
[ENA]
¢þ
>WENV170551782
CXWJ01022922
[CXWJ] wastewater metagenome; activated sludge
836
911
+
Lys
CTT
[ENA]
¢þ
>WENV170576450
FRDC01000627
[FRDC] freshwater metagenome; water
8140
8215
+
Lys
CTT
[ENA]
¢þ
>WENV170577549
FSSH01000169
[FSSH] freshwater metagenome; drinking water
3578
3503
-
Lys
CTT
[ENA]
¢þ
>WENV170680819
LFEF01024589
[LFEF] freshwater metagenome; waterbloom
2650
2575
-
Lys
CTT
[ENA]
¢þ
>C181001048
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
1967810
1967885
+
Lys
CTT
-
¡û
>W09102984
AAIS01000001
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
769429
769504
+
Lys
CTT
[ENA]
¡û
>W1910182866
BJNF01000106
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
11385
11460
+
Lys
CTT
[ENA]
¡û
>C09108128
CP001196
Alphaproteobacteria
Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
1284300
1284375
+
Lys
CTT
-
¡û
>W10119562
ADVZ01000001
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
191336
191261
-
Lys
CTT
[ENA]
¡û
>C11116278
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
2841278
2841203
-
Lys
CTT
[Ensembl]
¡û
>W11125828
ADVZ01000001
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
191336
191261
-
Lys
CTT
[ENA]
¡û
>W11168466
AFOF01000035
Alphaproteobacteria
Bradyrhizobiaceae bacterium SG-6C [AFOF]
92241
92166
-
Lys
CTT
[ENA]
¡û
>C121002998
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
2840157
2840082
-
Lys
CTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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