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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293769 (81 seq.)
>W1711326601
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
231557
231632
+
Gly
GCC
[ENA]
¡û
>W1711326639
MBFM01000005
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
52621
52546
-
Gly
GCC
[ENA]
¡û
>W1711413786
MGWV01000062
Betaproteobacteria
Gallionellales bacterium RBG_16_57_15 [MGWV]
2282
2357
+
Gly
GCC
[ENA]
¡û
>W1711504158
MKUH01000013
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
54852
54777
-
Gly
GCC
[ENA]
¡û
>W1711504160
MKUH01000013
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
54620
54545
-
Gly
GCC
[ENA]
¡û
>C171089768
CP019169
Betaproteobacteria
Betaproteobacteria bacterium GR16-43 [CP019169]
3266775
3266850
+
Gly
GCC
-
¡û
>W131223730
AUCH01000001
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
100558
100633
+
Gly
GCC
[ENA]
¡û
>W131223732
AUCH01000001
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
102075
102150
+
Gly
GCC
[ENA]
¡û
>W131223733
AUCH01000001
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
102182
102257
+
Gly
GCC
[ENA]
¡û
>WENV180099585
NMRC01019883
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
356
431
+
Gly
GCC
[ENA]
¢þ
>WENV180286164
OBIG01004634
[OBIG] metagenome; freshwater sediment
164
239
+
Gly
GCC
[ENA]
¢þ
>WENV180291981
OBIV01253461
[OBIV] soil metagenome; Clay
163
88
-
Gly
GCC
[ENA]
¢þ
>WENV180343100
OBLJ01289985
[OBLJ] soil metagenome; Clay
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180344565
OBLL01044901
[OBLL] soil metagenome; soil
111
36
-
Gly
GCC
[ENA]
¢þ
>WENV180691687
OCZS010187384
[OCZS] soil metagenome; soil
97
172
+
Gly
GCC
[ENA]
¢þ
>WENV181167523
OEIU01039024
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
988
913
-
Gly
GCC
[ENA]
¢þ
>WENV181297769
OFHK01128694
[OFHK] soil metagenome; Clay
340
265
-
Gly
GCC
[ENA]
¢þ
>WENV181364581
OFOZ01000024
[OFOZ] sediment metagenome; Lake sediment
12110
12035
-
Gly
GCC
[ENA]
¢þ
>WENV181364996
OFPH01000077
[OFPH] sediment metagenome; Lake sediment
3306
3381
+
Gly
GCC
[ENA]
¢þ
>WENV181365177
OFPL01000010
[OFPL] sediment metagenome; Lake sediment
17214
17139
-
Gly
GCC
[ENA]
¢þ
>WENV181369723
OFQP01028832
[OFQP] freshwater metagenome; Freshwater Lake
91
166
+
Gly
GCC
[ENA]
¢þ
>WENV183735241
PJUA01005275
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
890
965
+
Gly
GCC
[ENA]
¢þ
>WENV170010739
APMI01027024
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
7974
8049
+
Gly
GCC
[ENA]
¢þ
>WENV170010917
APMI01035089
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1656
1731
+
Gly
GCC
[ENA]
¢þ
>WENV170010919
APMI01035089
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1857
1932
+
Gly
GCC
[ENA]
¢þ
>WENV170012279
APMI01145673
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
35
110
+
Gly
GCC
[ENA]
¢þ
>WENV170571866
FLOH01000348
[FLOH] marine metagenome; water
24731
24806
+
Gly
GCC
[ENA]
¢þ
>WENV170650106
JRYD01011408
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
1727
1802
+
Gly
GCC
[ENA]
¢þ
>WENV170651852
JRYG01006671
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
15751
15826
+
Gly
GCC
[ENA]
¢þ
>WENV170651854
JRYG01006671
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
15971
16046
+
Gly
GCC
[ENA]
¢þ
>WENV170653025
JRYI01000895
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
2367
2442
+
Gly
GCC
[ENA]
¢þ
>WENV170653159
JRYI01008633
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
1520
1595
+
Gly
GCC
[ENA]
¢þ
>WENV170709310
LNFM01000254
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
84191
84116
-
Gly
GCC
[ENA]
¢þ
>WENV170709311
LNFM01000254
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
84008
83933
-
Gly
GCC
[ENA]
¢þ
>WENV170710382
LNFM01001660
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
38192
38267
+
Gly
GCC
[ENA]
¢þ
>WENV170712066
LNFM01009537
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
13575
13500
-
Gly
GCC
[ENA]
¢þ
>WENV170712820
LNFM01018427
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3095
3170
+
Gly
GCC
[ENA]
¢þ
>C181187720
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
601143
601218
+
Gly
GCC
-
¡û
>C181187721
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
601293
601368
+
Gly
GCC
-
¡û
>C181187722
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
601408
601483
+
Gly
GCC
-
¡û
>C181187724
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
601657
601732
+
Gly
GCC
-
¡û
>C181187725
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
713349
713424
+
Gly
GCC
-
¡û
>W09100861
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
597551
597626
+
Gly
GCC
[ENA]
¡û
>W09100863
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
597771
597846
+
Gly
GCC
[ENA]
¡û
>W09100893
AADF01000006
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
69394
69319
-
Gly
GCC
[ENA]
¡û
>W09100894
AADF01000006
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
64397
64322
-
Gly
GCC
[ENA]
¡û
>W141811284
JPXI01000023
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
108918
108843
-
Gly
GCC
[ENA]
¡û
>W141811285
JPXI01000023
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
108760
108685
-
Gly
GCC
[ENA]
¡û
>W141811286
JPXI01000023
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
108637
108562
-
Gly
GCC
[ENA]
¡û
>W141811287
JPXI01000023
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
108521
108446
-
Gly
GCC
[ENA]
¡û
>W1930020297
MWUM01000028
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
68456
68381
-
Gly
GCC
[ENA]
¡û
>W1910828066
MWUM01000006
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
197181
197256
+
Gly
GCC
[ENA]
¡û
>W1910828078
MWUM01000014
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
78
3
-
Gly
GCC
[ENA]
¡û
>W1910828084
MWUM01000023
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
25313
25388
+
Gly
GCC
[ENA]
¡û
>W1910828101
MWUM01000165
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
200
275
+
Gly
GCC
[ENA]
¡û
>W1810068115
PDZH01000078
Betaproteobacteria
Chitinimonas sp. BJB300 [PDZH]
7233
7308
+
Gly
GCC
[ENA]
¡û
>W1810068116
PDZH01000078
Betaproteobacteria
Chitinimonas sp. BJB300 [PDZH]
7341
7416
+
Gly
GCC
[ENA]
¡û
>W1810068117
PDZH01000078
Betaproteobacteria
Chitinimonas sp. BJB300 [PDZH]
7447
7522
+
Gly
GCC
[ENA]
¡û
>W1810068325
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2614325
2614250
-
Gly
GCC
[ENA]
¡û
>W1810068326
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2614157
2614082
-
Gly
GCC
[ENA]
¡û
>W1810068327
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2614013
2613938
-
Gly
GCC
[ENA]
¡û
>W1810068328
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2613881
2613806
-
Gly
GCC
[ENA]
¡û
>W1810068329
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2613722
2613647
-
Gly
GCC
[ENA]
¡û
>W1810121324
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1715905
1715830
-
Gly
GCC
[ENA]
¡û
>W1810121325
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1715737
1715662
-
Gly
GCC
[ENA]
¡û
>W1810121326
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1715590
1715515
-
Gly
GCC
[ENA]
¡û
>W1810121327
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1715459
1715384
-
Gly
GCC
[ENA]
¡û
>W1810121328
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1715294
1715219
-
Gly
GCC
[ENA]
¡û
>SRA1003934
SRR002328.47373
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
72
-1
-
Gly
GCC
[SRA]
>C151071189
CP010554
Betaproteobacteria
Rugosibacter aromaticivorans Ca6 [CP010554]
535708
535783
+
Gly
GCC
[Ensembl]
¡û
>W1511705378
LGRD01000024
Betaproteobacteria
Methylibium sp. NZG [LGRD]
92724
92799
+
Gly
GCC
[ENA]
¡û
>C161053726
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
1527649
1527724
+
Gly
GCC
[Ensembl]
¡û
>C161053728
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
1527931
1528006
+
Gly
GCC
[Ensembl]
¡û
>W1611063337
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
231557
231632
+
Gly
GCC
[ENA]
¡û
>W1611063375
MBFM01000005
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
52621
52546
-
Gly
GCC
[ENA]
¡û
>WENV080230
AATO01014972
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
36
113
+
Gly
GCC
[ENA]
>W1710720623
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
487796
487871
+
Gly
GCC
[ENA]
¡û
>W1710720624
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
487964
488039
+
Gly
GCC
[ENA]
¡û
>W1710720625
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
488111
488186
+
Gly
GCC
[ENA]
¡û
>W1710720626
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
488243
488318
+
Gly
GCC
[ENA]
¡û
>W1710720627
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
488408
488483
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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