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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293804 (73 seq.)
>W1710866829
LMHU01000006
Actinomycetota
Terrabacter sp. Root181 [LMHU]
39841
39916
+
Gly
GCC
[ENA]
¡û
>W1710866837
LMHU01000007
Actinomycetota
Terrabacter sp. Root181 [LMHU]
30717
30644
-
Gly
GCC
[ENA]
¡û
>W1710868161
LMIW01000008
Actinomycetota
Terrabacter sp. Root85 [LMIW]
937819
937892
+
Gly
GCC
[ENA]
¡û
>W1710868164
LMIW01000008
Actinomycetota
Terrabacter sp. Root85 [LMIW]
991109
991184
+
Gly
GCC
[ENA]
¡û
>W1710881160
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1391397
1391470
+
Gly
GCC
[ENA]
¡û
>W1710881163
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1462715
1462790
+
Gly
GCC
[ENA]
¡û
>W1710881209
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
1071969
1071896
-
Gly
GCC
[ENA]
¡û
>W1710881212
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
1019488
1019413
-
Gly
GCC
[ENA]
¡û
>W131217028
ATWJ01000009
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
27311
27238
-
Gly
GCC
[ENA]
¡û
>W1711724823
MTQN01000009
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
33708
33781
+
Gly
GCC
[ENA]
¡û
>W1711724828
MTQN01000009
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
26697
26624
-
Gly
GCC
[ENA]
¡û
>W131185543
ARTT01000014
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
434680
434605
-
Gly
GCC
[ENA]
¡û
>W131185561
ARTT01000019
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
90283
90356
+
Gly
GCC
[ENA]
¡û
>WENV180098735
MTBK01264263
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
856
930
+
Gly
GCC
[ENA]
¢þ
>WENV180309201
OBJR01675477
[OBJR] soil metagenome; soil
173
100
-
Gly
GCC
[ENA]
¢þ
>WENV181167766
OEIU01071945
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
798
723
-
Gly
GCC
[ENA]
¢þ
>WENV181170818
OEIV010093755
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
492
567
+
Gly
GCC
[ENA]
¢þ
>W141142485
AWQS01000072
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
632
559
-
Gly
GCC
[ENA]
¡û
>W141143061
AWSA01000016
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
85717
85790
+
Gly
GCC
[ENA]
¡û
>W141143068
AWSA01000019
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
12983
13056
+
Gly
GCC
[ENA]
¡û
>WENV170194859
CEPJ01074581
[CEPJ] marine metagenome genome assembly TARA_048_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
195
120
-
Gly
GCC
[ENA]
¢þ
>WENV170205643
CEPT01109635
[CEPT] marine metagenome genome assembly TARA_039_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1947
1872
-
Gly
GCC
[ENA]
¢þ
>WENV170441071
CEUV01146767
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
520
445
-
Gly
GCC
[ENA]
¢þ
>WENV170580265
FUFK010045263
[FUFK] metagenome; unknown
12154
12079
-
Gly
GCC
[ENA]
¢þ
>WENV170585283
FUFK010276851
[FUFK] metagenome; unknown
932
857
-
Gly
GCC
[ENA]
¢þ
>WENV170587111
FUFK010467974
[FUFK] metagenome; unknown
1826
1901
+
Gly
GCC
[ENA]
¢þ
>WENV170771190
LXNI01000616
[LXNI] sponge metagenome; marine sponge reef
12553
12626
+
Gly
GCC
[ENA]
¢þ
>WENV170772850
LXNJ01000701
[LXNJ] sponge metagenome; marine sponge reef
18659
18586
-
Gly
GCC
[ENA]
¢þ
>WENV170774102
LXNJ01022953
[LXNJ] sponge metagenome; marine sponge reef
253
180
-
Gly
GCC
[ENA]
¢þ
>WENV170803243
MDSW01026965
[MDSW] marine metagenome; seawater
925
1000
+
Gly
GCC
[ENA]
¢þ
>WENV170845517
MDTA01025354
[MDTA] marine metagenome; seawater
2215
2140
-
Gly
GCC
[ENA]
¢þ
>WENV170864852
MDTB01111384
[MDTB] marine metagenome; seawater
8486
8561
+
Gly
GCC
[ENA]
¢þ
>WENV170883823
MDTC01173212
[MDTC] marine metagenome; seawater
3592
3667
+
Gly
GCC
[ENA]
¢þ
>WENV170896195
MDTD01091718
[MDTD] marine metagenome; seawater
2701
2776
+
Gly
GCC
[ENA]
¢þ
>WENV170908244
MDTE01062333
[MDTE] marine metagenome; seawater
1375
1300
-
Gly
GCC
[ENA]
¢þ
>WENV170958102
MKWU01000517
[MKWU] sponge metagenome;
55837
55910
+
Gly
GCC
[ENA]
¢þ
>WENV170958613
MKWU01001497
[MKWU] sponge metagenome;
9877
9802
-
Gly
GCC
[ENA]
¢þ
>WENV170959123
MKWU01003154
[MKWU] sponge metagenome;
6263
6188
-
Gly
GCC
[ENA]
¢þ
>C181185145
CP029788
Actinomycetota
Streptomyces actuosus ATCC 25421 [CP029788]
4002117
4002192
+
Gly
GCC
-
¡û
>C181196305
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
1872576
1872503
-
Gly
GCC
-
¡û
>C181196308
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
1872251
1872177
-
Gly
GCC
-
¡û
>C181197183
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
735980
735907
-
Gly
GCC
-
¡û
>W141564785
JIBA01000013
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
119831
119904
+
Gly
GCC
[ENA]
¡û
>W141564788
JIBA01000013
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
223385
223460
+
Gly
GCC
[ENA]
¡û
>W09109265
ABUC01000008
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
73176
73249
+
Gly
GCC
[ENA]
¡û
>W09109269
ABUC01000008
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
55135
55062
-
Gly
GCC
[ENA]
¡û
>W141773517
JOIN01000001
Actinomycetota
Corynebacterium variabile [JOIN]
267799
267726
-
Gly
GCC
[ENA]
¡û
>W141773520
JOIN01000001
Actinomycetota
Corynebacterium variabile [JOIN]
250610
250535
-
Gly
GCC
[ENA]
¡û
>W1911495834
OBQK01000001
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
107435
107362
-
Gly
GCC
[ENA]
¡û
>W1911817398
QZMN01000001
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
383947
384020
+
Gly
GCC
[ENA]
¡û
>W1810535047
QDDJ01000012
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
86233
86160
-
Gly
GCC
[ENA]
¡û
>W1810592365
QFXK01000026
Actinomycetota
Kribbella monticola NEAU-SW521 [QFXK]
124476
124549
+
Gly
GCC
[ENA]
¡û
>W1810697559
QLVD01000019
Actinomycetota
Ornithinimicrobium murale DSM 22056 [QLVD]
83363
83436
+
Gly
GCC
[ENA]
¡û
>SRA1008501
SRR020490.398594
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
20
95
+
Gly
GCC
[SRA]
>WENV002844
AACY020077841
Marine microbial communities from Global Ocean Sampling (GOS)
1066
1141
+
Gly
GCC
[ENA]
>C10107954
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
3596933
3597006
+
Gly
GCC
[Ensembl]
¡û
>C10107976
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
3578891
3578818
-
Gly
GCC
[Ensembl]
¡û
>C11111438
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
2135193
2135120
-
Gly
GCC
[Ensembl]
¡û
>C11111441
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
2134868
2134793
-
Gly
GCC
[Ensembl]
¡û
>W1511534711
JYOE01000004
Actinomycetota
Terrabacter sp. 28 [JYOE]
35305
35378
+
Gly
GCC
[ENA]
¡û
>W1511534714
JYOE01000004
Actinomycetota
Terrabacter sp. 28 [JYOE]
42206
42281
+
Gly
GCC
[ENA]
¡û
>W1511625875
LCZK01000010
Actinomycetota
Actinobacteria bacterium IMCC26207 [LCZK]
717823
717748
-
Gly
GCC
[ENA]
¡û
>WENV047821
AACY022691435
Marine microbial communities from Global Ocean Sampling (GOS)
226
151
-
Gly
GCC
[ENA]
>W1610729175
LMHU01000006
Actinomycetota
Terrabacter sp. Root181 [LMHU]
39841
39916
+
Gly
GCC
[ENA]
¡û
>W1610729183
LMHU01000007
Actinomycetota
Terrabacter sp. Root181 [LMHU]
30717
30644
-
Gly
GCC
[ENA]
¡û
>W1610730507
LMIW01000008
Actinomycetota
Terrabacter sp. Root85 [LMIW]
937819
937892
+
Gly
GCC
[ENA]
¡û
>W1610730510
LMIW01000008
Actinomycetota
Terrabacter sp. Root85 [LMIW]
991109
991184
+
Gly
GCC
[ENA]
¡û
>W1610743506
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1391397
1391470
+
Gly
GCC
[ENA]
¡û
>W1610743509
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1462715
1462790
+
Gly
GCC
[ENA]
¡û
>W1610743555
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
1071969
1071896
-
Gly
GCC
[ENA]
¡û
>W1610743558
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
1019488
1019413
-
Gly
GCC
[ENA]
¡û
>W1710557996
FOLM01000010
Actinomycetota
Streptomyces aidingensis [FOLM]
120828
120903
+
Gly
GCC
[ENA]
¡û
>W1710557997
FOLM01000010
Actinomycetota
Streptomyces aidingensis [FOLM]
124954
125027
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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