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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293915 (115 seq.)
>W1710860993
LMDI01000001
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
16804
16729
-
Asn
GTT
[ENA]
¡û
>W1710867482
LMIH01000041
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
216133
216208
+
Asn
GTT
[ENA]
¡û
>W1710873513
LMMV01000021
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
401204
401279
+
Asn
GTT
[ENA]
¡û
>W1711172941
LWCN01000003
Betaproteobacteria
Delftia sp. GW456-R20 [LWCN]
980191
980266
+
Asn
GTT
[ENA]
¡û
>W1711172942
LWCN01000003
Betaproteobacteria
Delftia sp. GW456-R20 [LWCN]
980320
980395
+
Asn
GTT
[ENA]
¡û
>W1711172943
LWCN01000003
Betaproteobacteria
Delftia sp. GW456-R20 [LWCN]
980441
980516
+
Asn
GTT
[ENA]
¡û
>W1711504796
MKUX01000048
Betaproteobacteria
Delftia sp. 67-8 [MKUX]
68823
68748
-
Asn
GTT
[ENA]
¡û
>W1711504797
MKUX01000048
Betaproteobacteria
Delftia sp. 67-8 [MKUX]
68695
68620
-
Asn
GTT
[ENA]
¡û
>W1711504798
MKUX01000048
Betaproteobacteria
Delftia sp. 67-8 [MKUX]
68574
68499
-
Asn
GTT
[ENA]
¡û
>W1711853538
MYFL01000001
Betaproteobacteria
Delftia sp. K82 [MYFL]
1077956
1077881
-
Asn
GTT
[ENA]
¡û
>W1711853539
MYFL01000001
Betaproteobacteria
Delftia sp. K82 [MYFL]
1077827
1077752
-
Asn
GTT
[ENA]
¡û
>W1711853540
MYFL01000001
Betaproteobacteria
Delftia sp. K82 [MYFL]
1077706
1077631
-
Asn
GTT
[ENA]
¡û
>C171062178
CP017420
Betaproteobacteria
Delftia tsuruhatensis CM13 [CP017420]
6885090
6885015
-
Asn
GTT
-
¡û
>C171062179
CP017420
Betaproteobacteria
Delftia tsuruhatensis CM13 [CP017420]
6884962
6884887
-
Asn
GTT
-
¡û
>C171062180
CP017420
Betaproteobacteria
Delftia tsuruhatensis CM13 [CP017420]
6884841
6884766
-
Asn
GTT
-
¡û
>C171072902
CP018101
Betaproteobacteria
Delftia sp. HK171 [CP018101]
5047872
5047947
+
Asn
GTT
-
¡û
>C171072903
CP018101
Betaproteobacteria
Delftia sp. HK171 [CP018101]
5048001
5048076
+
Asn
GTT
-
¡û
>C171072904
CP018101
Betaproteobacteria
Delftia sp. HK171 [CP018101]
5048122
5048197
+
Asn
GTT
-
¡û
>C171089899
CP019171
Betaproteobacteria
Delftia acidovorans [CP019171]
5100948
5101023
+
Asn
GTT
-
¡û
>C171089900
CP019171
Betaproteobacteria
Delftia acidovorans [CP019171]
5101077
5101152
+
Asn
GTT
-
¡û
>C171089901
CP019171
Betaproteobacteria
Delftia acidovorans [CP019171]
5101198
5101273
+
Asn
GTT
-
¡û
>C171091655
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
3443570
3443495
-
Asn
GTT
-
¡û
>W131002530
AGYX01000013
Betaproteobacteria
Delftia acidovorans CCUG 274B [AGYX]
20
95
+
Asn
GTT
[ENA]
¡û
>W131002562
AGYX01000071
Betaproteobacteria
Delftia acidovorans CCUG 274B [AGYX]
94
19
-
Asn
GTT
[ENA]
¡û
>W131104513
APCR01000164
Betaproteobacteria
Comamonas sp. B-9 [APCR]
11661
11736
+
Asn
GTT
[ENA]
¡û
>W131104514
APCR01000164
Betaproteobacteria
Comamonas sp. B-9 [APCR]
11783
11858
+
Asn
GTT
[ENA]
¡û
>W131104515
APCR01000164
Betaproteobacteria
Comamonas sp. B-9 [APCR]
11906
11981
+
Asn
GTT
[ENA]
¡û
>W131164739
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
984804
984729
-
Asn
GTT
[ENA]
¡û
>C017299
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
1976097
1976172
+
Asn
GTT
[Ensembl]
¡û
>C017343
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
2422284
2422359
+
Asn
GTT
[Ensembl]
¡û
>w020791
AAVD01000001
Betaproteobacteria
Delftia acidovorans SPH-1 [AAVD]
1001950
1001873
-
Asn
GTT
[ENA]
¡û
>w020790
AAVD01000001
Betaproteobacteria
Delftia acidovorans SPH-1 [AAVD]
1002071
1001994
-
Asn
GTT
[ENA]
¡û
>w020789
AAVD01000001
Betaproteobacteria
Delftia acidovorans SPH-1 [AAVD]
1002200
1002123
-
Asn
GTT
[ENA]
¡û
>WENV180016243
FSUG01000060
[FSUG] metagenome; soil
23
98
+
Asn
GTT
[ENA]
¢þ
>WENV180111270
OAPN01050417
[OAPN] marine metagenome; 2011
302
227
-
Asn
GTT
[ENA]
¢þ
>WENV180731980
ODGW01053474
[ODGW] human metagenome; G_DNA_Supragingival plaque
227
302
+
Asn
GTT
[ENA]
¢þ
>WENV181379087
OFRC01020806
[OFRC] wastewater metagenome; Exp Tend CN 10WW
523
448
-
Asn
GTT
[ENA]
¢þ
>C08007657
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
2422284
2422359
+
Asn
GTT
[Ensembl]
¡û
>C08004028
CP000884
Betaproteobacteria
Delftia acidovorans SPH-1 [CP000884]
5369204
5369279
+
Asn
GTT
[Ensembl]
¡û
>C08004029
CP000884
Betaproteobacteria
Delftia acidovorans SPH-1 [CP000884]
5369333
5369408
+
Asn
GTT
[Ensembl]
¡û
>C08004030
CP000884
Betaproteobacteria
Delftia acidovorans SPH-1 [CP000884]
5369454
5369529
+
Asn
GTT
[Ensembl]
¡û
>WENV183709402
PDWI01027828
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3316
3241
-
Asn
GTT
[ENA]
¢þ
>WENV183743409
PJUJ01000941
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
2733
2808
+
Asn
GTT
[ENA]
¢þ
>WENV183743411
PJUJ01000941
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
2972
3047
+
Asn
GTT
[ENA]
¢þ
>WENV183743670
PJUJ01018425
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
541
616
+
Asn
GTT
[ENA]
¢þ
>WENV183744166
PJUK01001122
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
479
554
+
Asn
GTT
[ENA]
¢þ
>WENV183744168
PJUK01001122
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
718
793
+
Asn
GTT
[ENA]
¢þ
>WENV183744996
PJUL01001195
[PJUL] feces metagenome; Chicken feces enriched on filter paper
4147
4222
+
Asn
GTT
[ENA]
¢þ
>WENV183745078
PJUL01002035
[PJUL] feces metagenome; Chicken feces enriched on filter paper
446
521
+
Asn
GTT
[ENA]
¢þ
>WENV183745080
PJUL01002035
[PJUL] feces metagenome; Chicken feces enriched on filter paper
685
760
+
Asn
GTT
[ENA]
¢þ
>WENV170559077
CXWL01109110
[CXWL] groundwater metagenome; biofilm material
2715
2640
-
Asn
GTT
[ENA]
¢þ
>WENV170705471
LNAO01000833
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1563
1488
-
Asn
GTT
[ENA]
¢þ
>WENV170705472
LNAO01000833
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1434
1359
-
Asn
GTT
[ENA]
¢þ
>W141484585
JFYT01000013
Betaproteobacteria
Delftia sp. RIT313 [JFYT]
115563
115638
+
Asn
GTT
[ENA]
¡û
>W141484586
JFYT01000013
Betaproteobacteria
Delftia sp. RIT313 [JFYT]
115692
115767
+
Asn
GTT
[ENA]
¡û
>C191073174
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
3326783
3326858
+
Asn
GTT
-
¡û
>W09101610
AAFQ02000003
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
179659
179584
-
Asn
GTT
[ENA]
¡û
>W141754961
JNWH01000009
Betaproteobacteria
Delftia tsuruhatensis [JNWH]
25573
25498
-
Asn
GTT
[ENA]
¡û
>W141755044
JNWI01000020
Betaproteobacteria
Delftia sp. 670 [JNWI]
20
95
+
Asn
GTT
[ENA]
¡û
>W141755079
JNWI01000091
Betaproteobacteria
Delftia sp. 670 [JNWI]
88
13
-
Asn
GTT
[ENA]
¡û
>W1910206342
FLCF02000009
Betaproteobacteria
Delftia acidovorans [FLCF]
111890
111965
+
Asn
GTT
[ENA]
¡û
>W1910206343
FLCF02000009
Betaproteobacteria
Delftia acidovorans [FLCF]
112018
112093
+
Asn
GTT
[ENA]
¡û
>W1910206344
FLCF02000009
Betaproteobacteria
Delftia acidovorans [FLCF]
112139
112214
+
Asn
GTT
[ENA]
¡û
>W1910699866
MERZ01000022
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
9309
9234
-
Asn
GTT
[ENA]
¡û
>W1910859493
NBZV01000002
Betaproteobacteria
Polaromonas sp. AER18D-145 [NBZV]
42116
42191
+
Asn
GTT
[ENA]
¡û
>W1910859537
NBZW01000005
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
46428
46503
+
Asn
GTT
[ENA]
¡û
>W1910888835
NESD01000004
Betaproteobacteria
Limnohabitans sp. Jir61 [NESD]
201371
201446
+
Asn
GTT
[ENA]
¡û
>W1911497694
OCRO01000001
Betaproteobacteria
Delftia acidovorans ATCC 11299b [OCRO]
1186745
1186670
-
Asn
GTT
[ENA]
¡û
>W1911497695
OCRO01000001
Betaproteobacteria
Delftia acidovorans ATCC 11299b [OCRO]
1186616
1186541
-
Asn
GTT
[ENA]
¡û
>W1911497696
OCRO01000001
Betaproteobacteria
Delftia acidovorans ATCC 11299b [OCRO]
1186495
1186420
-
Asn
GTT
[ENA]
¡û
>W1911573283
PDEA01000001
Betaproteobacteria
Comamonas terrigena FDAARGOS_394 [PDEA]
3657920
3657995
+
Asn
GTT
[ENA]
¡û
>W1911573285
PDEA01000001
Betaproteobacteria
Comamonas terrigena FDAARGOS_394 [PDEA]
3658159
3658234
+
Asn
GTT
[ENA]
¡û
>W1911775424
QXNC01000042
Betaproteobacteria
Simplicispira metamorpha NBRC 13960 [QXNC]
18178
18253
+
Asn
GTT
[ENA]
¡û
>W1911775425
QXNC01000042
Betaproteobacteria
Simplicispira metamorpha NBRC 13960 [QXNC]
18292
18367
+
Asn
GTT
[ENA]
¡û
>W1810071698
PEEW01000001
Betaproteobacteria
Burkholderiales bacterium 23 [PEEW]
2084666
2084591
-
Asn
GTT
[ENA]
¡û
>W1810071699
PEEW01000001
Betaproteobacteria
Burkholderiales bacterium 23 [PEEW]
2084537
2084462
-
Asn
GTT
[ENA]
¡û
>W1810071700
PEEW01000001
Betaproteobacteria
Burkholderiales bacterium 23 [PEEW]
2084416
2084341
-
Asn
GTT
[ENA]
¡û
>W1810072112
PEFD01000001
Betaproteobacteria
Delftia sp. 60 [PEFD]
5046663
5046738
+
Asn
GTT
[ENA]
¡û
>W1810072113
PEFD01000001
Betaproteobacteria
Delftia sp. 60 [PEFD]
5046792
5046867
+
Asn
GTT
[ENA]
¡û
>W1810072114
PEFD01000001
Betaproteobacteria
Delftia sp. 60 [PEFD]
5046913
5046988
+
Asn
GTT
[ENA]
¡û
>W1810078572
PEKB02000205
Betaproteobacteria
Delftia acidovorans B15 [PEKB]
20322
20247
-
Asn
GTT
[ENA]
¡û
>W1810078573
PEKB02000205
Betaproteobacteria
Delftia acidovorans B15 [PEKB]
20193
20118
-
Asn
GTT
[ENA]
¡û
>W1810078574
PEKB02000205
Betaproteobacteria
Delftia acidovorans B15 [PEKB]
20072
19997
-
Asn
GTT
[ENA]
¡û
>SRA1004037
SRR002328.109162
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
151
226
+
Asn
GTT
[SRA]
>W1810305935
PTQY01000008
Betaproteobacteria
Rhodoferax sp. TS-BS-61-7 [PTQY]
112884
112959
+
Asn
GTT
[ENA]
¡û
>W1810577618
QEOJ01000004
Betaproteobacteria
Rhodoferax sp. YR267 [QEOJ]
305416
305341
-
Asn
GTT
[ENA]
¡û
>W1810577619
QEOJ01000004
Betaproteobacteria
Rhodoferax sp. YR267 [QEOJ]
305256
305181
-
Asn
GTT
[ENA]
¡û
>W1810759437
QPJK01000005
Betaproteobacteria
Pseudorhodoferax soli DSM 21634 [QPJK]
137034
136959
-
Asn
GTT
[ENA]
¡û
>W1810759438
QPJK01000005
Betaproteobacteria
Pseudorhodoferax soli DSM 21634 [QPJK]
136941
136866
-
Asn
GTT
[ENA]
¡û
>ENV09001357
ABSR01002844
Freshwater sediment metagenome lwMethylamine_C1
2819
2894
+
Asn
GTT
[ENA]
¡û
>ENV09001375
ABSR01003909
Freshwater sediment metagenome lwMethylamine_C1
4120
4045
-
Asn
GTT
[ENA]
¡û
>C11107021
CP002735
Betaproteobacteria
Delftia sp. Cs1-4 [CP002735]
2248536
2248461
-
Asn
GTT
[Ensembl]
¡û
>C11107022
CP002735
Betaproteobacteria
Delftia sp. Cs1-4 [CP002735]
2248407
2248332
-
Asn
GTT
[Ensembl]
¡û
>C11107023
CP002735
Betaproteobacteria
Delftia sp. Cs1-4 [CP002735]
2248286
2248211
-
Asn
GTT
[Ensembl]
¡û
>W1511220557
JNCQ01000017
Betaproteobacteria
Delftia lacustris LZ-C [JNCQ]
22948
22873
-
Asn
GTT
[ENA]
¡û
>W1511220558
JNCQ01000017
Betaproteobacteria
Delftia lacustris LZ-C [JNCQ]
22820
22745
-
Asn
GTT
[ENA]
¡û
>W1511220559
JNCQ01000017
Betaproteobacteria
Delftia lacustris LZ-C [JNCQ]
22699
22624
-
Asn
GTT
[ENA]
¡û
>W121084919
AKIV01000072
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
16283
16208
-
Asn
GTT
[ENA]
¡û
>W1610070841
BCTO01000024
Betaproteobacteria
Delftia tsuruhatensis NBRC 16741 [BCTO]
111514
111589
+
Asn
GTT
[ENA]
¡û
>W1610070842
BCTO01000024
Betaproteobacteria
Delftia tsuruhatensis NBRC 16741 [BCTO]
111642
111717
+
Asn
GTT
[ENA]
¡û
>W1610070843
BCTO01000024
Betaproteobacteria
Delftia tsuruhatensis NBRC 16741 [BCTO]
111763
111838
+
Asn
GTT
[ENA]
¡û
>W1610723339
LMDI01000001
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
16804
16729
-
Asn
GTT
[ENA]
¡û
>W1610729828
LMIH01000041
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
216133
216208
+
Asn
GTT
[ENA]
¡û
>W1610735859
LMMV01000021
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
401204
401279
+
Asn
GTT
[ENA]
¡û
>W1610981546
LWCN01000003
Betaproteobacteria
Delftia sp. GW456-R20 [LWCN]
980191
980266
+
Asn
GTT
[ENA]
¡û
>W1610981547
LWCN01000003
Betaproteobacteria
Delftia sp. GW456-R20 [LWCN]
980320
980395
+
Asn
GTT
[ENA]
¡û
>W1610981548
LWCN01000003
Betaproteobacteria
Delftia sp. GW456-R20 [LWCN]
980441
980516
+
Asn
GTT
[ENA]
¡û
>W1710068163
BCTO01000024
Betaproteobacteria
Delftia tsuruhatensis NBRC 16741 [BCTO]
111514
111589
+
Asn
GTT
[ENA]
¡û
>W1710068164
BCTO01000024
Betaproteobacteria
Delftia tsuruhatensis NBRC 16741 [BCTO]
111642
111717
+
Asn
GTT
[ENA]
¡û
>W1710068165
BCTO01000024
Betaproteobacteria
Delftia tsuruhatensis NBRC 16741 [BCTO]
111763
111838
+
Asn
GTT
[ENA]
¡û
>W1710524793
FNJA01000001
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
480493
480568
+
Asn
GTT
[ENA]
¡û
>W1710524794
FNJA01000001
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
480653
480728
+
Asn
GTT
[ENA]
¡û
>W1710551508
FOGD01000001
Betaproteobacteria
Giesbergeria anulus [FOGD]
59409
59484
+
Asn
GTT
[ENA]
¡û
>W1710551509
FOGD01000001
Betaproteobacteria
Giesbergeria anulus [FOGD]
59532
59607
+
Asn
GTT
[ENA]
¡û
>W1710578290
FPBM01000001
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
223769
223844
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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