This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293930 (23 seq.)
>W1710892671
LNDZ01000021
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
36910
36835
-
Thr
CGT
[ENA]
¡û
>W131169709
AREX01000017
Betaproteobacteria
Uliginosibacterium gangwonense DSM 18521 [AREX]
52019
51944
-
Thr
CGT
[ENA]
¡û
>C001293
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
1283196
1283271
+
Thr
CGT
[Ensembl]
¡û
>C001382
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
469570
469495
-
Thr
CGT
[Ensembl]
¡û
>WENV180099461
NMRC01006348
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
2049
2124
+
Thr
CGT
[ENA]
¢þ
>WENV180247371
OBEQ010021252
[OBEQ] groundwater metagenome; groundwater
186
111
-
Thr
CGT
[ENA]
¢þ
>WENV181168543
OEIU01468769
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
174
99
-
Thr
CGT
[ENA]
¢þ
>WENV181171260
OEIV010180853
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
169
244
+
Thr
CGT
[ENA]
¢þ
>WENV170709419
LNFM01000328
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
121431
121506
+
Thr
CGT
[ENA]
¢þ
>WENV170713461
LNFM01032071
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19
94
+
Thr
CGT
[ENA]
¢þ
>C181060406
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
413436
413511
+
Thr
CGT
-
¡û
>C181060470
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
3267043
3267118
+
Thr
CGT
-
¡û
>C181081473
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
2988106
2988031
-
Thr
CGT
-
¡û
>C191022885
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1522980
1523055
+
Thr
CGT
-
¡û
>W1910183545
BJNV01000009
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
52154
52079
-
Thr
CGT
[ENA]
¡û
>W1910785463
MQNN01000027
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFE1 [MQNN]
9811
9736
-
Thr
CGT
[ENA]
¡û
>W1911072293
NMRM01000067
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFDO [NMRM]
7478
7553
+
Thr
CGT
[ENA]
¡û
>W1911072340
NMRN01000065
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFDCM [NMRN]
7477
7552
+
Thr
CGT
[ENA]
¡û
>W1810195604
PKRR01000004
Betaproteobacteria
Uliginosibacterium sp. TH139 [PKRR]
26750
26825
+
Thr
CGT
[ENA]
¡û
>W1810679145
QKOE01000004
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
275819
275894
+
Thr
CGT
[ENA]
¡û
>W1511581003
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
464317
464242
-
Thr
CGT
[ENA]
¡û
>C161095080
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
1366514
1366589
+
Thr
CGT
-
¡û
>W1610752937
LNDZ01000021
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
36910
36835
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK