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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293947 (45 seq.)
>W1711293477
LZYT01000003
Bacillota
Clostridium felsineum DSM 794 [LZYT]
115416
115491
+
Val
TAC
[ENA]
¡û
>W1711293499
LZYT01000013
Bacillota
Clostridium felsineum DSM 794 [LZYT]
101064
100989
-
Val
TAC
[ENA]
¡û
>W1711293503
LZYT01000013
Bacillota
Clostridium felsineum DSM 794 [LZYT]
100710
100635
-
Val
TAC
[ENA]
¡û
>W1711293507
LZYT01000013
Bacillota
Clostridium felsineum DSM 794 [LZYT]
100355
100280
-
Val
TAC
[ENA]
¡û
>W1711293570
LZYV01000033
Firmicutes
Clostridium roseum (LZYV) roseum [LZYV]
4036
3961
-
Val
TAC
[ENA]
¡û
>W1711293590
LZYV01000070
Firmicutes
Clostridium roseum (LZYV) roseum [LZYV]
63935
63860
-
Val
TAC
[ENA]
¡û
>W1711293594
LZYV01000070
Firmicutes
Clostridium roseum (LZYV) roseum [LZYV]
63582
63507
-
Val
TAC
[ENA]
¡û
>W1711293598
LZYV01000070
Firmicutes
Clostridium roseum (LZYV) roseum [LZYV]
63227
63152
-
Val
TAC
[ENA]
¡û
>W1711293646
LZYW01000034
Firmicutes
Clostridium aurantibutyricum (LZYW) aurantibutyricum [LZYW]
22744
22819
+
Val
TAC
[ENA]
¡û
>W1711293667
LZYW01000058
Firmicutes
Clostridium aurantibutyricum (LZYW) aurantibutyricum [LZYW]
5130
5205
+
Val
TAC
[ENA]
¡û
>W1711293671
LZYW01000058
Firmicutes
Clostridium aurantibutyricum (LZYW) aurantibutyricum [LZYW]
5484
5559
+
Val
TAC
[ENA]
¡û
>W1711293675
LZYW01000058
Firmicutes
Clostridium aurantibutyricum (LZYW) aurantibutyricum [LZYW]
5839
5914
+
Val
TAC
[ENA]
¡û
>W1711293753
LZYX01000001
Bacillota
Clostridium acetobutylicum [LZYX]
852413
852488
+
Val
TAC
[ENA]
¡û
>W131082798
ANZB01000004
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
88432
88507
+
Val
TAC
[ENA]
¡û
>W131082812
ANZB01000008
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
82659
82734
+
Val
TAC
[ENA]
¡û
>C171019466
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1785034
1785109
+
Val
TAC
-
¡û
>C171019496
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
3817845
3817770
-
Val
TAC
-
¡û
>C171019545
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1784069
1784144
+
Val
TAC
-
¡û
>C171019575
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
3816856
3816781
-
Val
TAC
-
¡û
>C005025
AE001437
Bacillota
Clostridium acetobutylicum ATCC 824 [AE001437]
2480526
2480451
-
Val
TAC
[Ensembl]
¡û
>WENV181412087
OGCI01081138
[OGCI] hot springs metagenome; Hot spring water
353
425
+
Val
TAC
[ENA]
¢þ
>WENV183226944
OLQO01035936
[OLQO] human gut metagenome; faeces
481
556
+
Val
TAC
[ENA]
¢þ
>WENV183709868
PDWI01035687
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
99
27
-
Val
TAC
[ENA]
¢þ
>WENV183719141
PDWJ01010114
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4216
4288
+
Val
TAC
[ENA]
¢þ
>WENV170655249
JTFN01014353
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
302
227
-
Val
TAC
[ENA]
¢þ
>WENV170655836
JTFN01081418
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
377
452
+
Val
TAC
[ENA]
¢þ
>WENV170656814
JTFO01046988
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
78
153
+
Val
TAC
[ENA]
¢þ
>WENV170657148
JTFO01091689
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
77
2
-
Val
TAC
[ENA]
¢þ
>WENV170977905
MTKZ01035046
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1485
1557
+
Leu
TAA
[ENA]
¢þ
>W141702306
JMLK01000005
Bacillota
Clostridium akagii DSM 12554 [JMLK]
256400
256325
-
Val
TAC
[ENA]
¡û
>W141803788
JPGY01000008
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
157772
157847
+
Val
TAC
[ENA]
¡û
>W141803835
JPGY01000012
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
332115
332040
-
Val
TAC
[ENA]
¡û
>W1910888158
NERI01000021
Bacillota
Clostridium acetobutylicum ATCC 55025 [NERI]
462544
462619
+
Val
TAC
[ENA]
¡û
>W1810085606
PETE01000002
Bacillota
Clostridium sp. CT7 [PETE]
3827577
3827652
+
Val
TAC
[ENA]
¡û
>W1810147528
PIQQ01000001
Bacillota
Clostridium acetobutylicum WA [PIQQ]
299015
299090
+
Val
TAC
[ENA]
¡û
>W1810394188
PYBN01000001
Bacillota
Clostridium sp. NJ4 [PYBN]
789150
789225
+
Val
TAC
[ENA]
¡û
>C151047042
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1784073
1784148
+
Val
TAC
[Ensembl]
¡û
>C151047072
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
3816885
3816810
-
Val
TAC
[Ensembl]
¡û
>C151047121
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1784073
1784148
+
Val
TAC
[Ensembl]
¡û
>C151047151
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
3817093
3817018
-
Val
TAC
[Ensembl]
¡û
>W1511357537
JRWL01000001
Bacillota
Clostridium acetobutylicum GXAS18-1 [JRWL]
627978
627903
-
Val
TAC
[ENA]
¡û
>W1511707426
LGVB01000015
Bacillota
Clostridium sp. DMHC 10 [LGVB]
1854850
1854925
+
Val
TAC
[ENA]
¡û
>W1511707432
LGVB01000015
Bacillota
Clostridium sp. DMHC 10 [LGVB]
3141368
3141293
-
Val
TAC
[ENA]
¡û
>W1511707438
LGVB01000015
Bacillota
Clostridium sp. DMHC 10 [LGVB]
239800
239725
-
Val
TAC
[ENA]
¡û
>W1710605736
FWXH01000003
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
60030
60105
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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