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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29408 (71 seq.)
>W1710853409
LLWQ01000154
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
3191
3102
-
Ser
CGA
[ENA]
¡û
>W1711385840
MEES01000043
Alphaproteobacteria
Paracoccus sp. SCN 68-21 [MEES]
9671
9760
+
Ser
CGA
[ENA]
¡û
>W1712104764
NIPZ01000076
Alphaproteobacteria
Paracoccus yeei [NIPZ]
24852
24763
-
Ser
CGA
[ENA]
¡û
>C171107678
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
2252874
2252785
-
Ser
CGA
-
¡û
>C171110753
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
72024
72113
+
Ser
CGA
-
¡û
>W131158907
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
2450212
2450123
-
Ser
CGA
[ENA]
¡û
>W131214671
ATUJ01000009
Alphaproteobacteria
Paracoccus zeaxanthinifaciens ATCC 21588 [ATUJ]
31309
31220
-
Ser
CGA
[ENA]
¡û
>C016053
CP000490
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
992265
992176
-
Ser
CGA
[Ensembl]
¡û
>WENV180381426
OBOR01294370
[OBOR] marine metagenome; ENVO 00002227
120
31
-
Ser
CGA
[ENA]
¢þ
>W141216630
AZVA01000006
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
2429
2340
-
Ser
CGA
[ENA]
¡û
>W141277314
JAEM01000027
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
14627
14538
-
Ser
CGA
[ENA]
¡û
>W141277343
JAEN01000002
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
91449
91360
-
Ser
CGA
[ENA]
¡û
>W141279585
JAGK01000026
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
46065
46154
+
Ser
CGA
[ENA]
¡û
>WENV183732832
PJTX01019705
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
465
376
-
Ser
CGA
[ENA]
¢þ
>WENV170191619
CEPD01041172
[CEPD] marine metagenome genome assembly TARA_064_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
324
413
+
Ser
CGA
[ENA]
¢þ
>WENV170564857
CZPY01000007
[CZPY] metagenome; PAHs-polluted Soil
80287
80376
+
Ser
CGA
[ENA]
¢þ
>C181116771
CP025408
Alphaproteobacteria
Paracoccus tegillarcae BM15 [CP025408]
3660090
3660179
+
Ser
CGA
-
¡û
>C181117169
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
1183943
1184032
+
Ser
CGA
-
¡û
>C181119667
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
1319624
1319713
+
Ser
CGA
-
¡û
>C181190840
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
2238122
2238033
-
Ser
CGA
-
¡û
>C191073607
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
389740
389651
-
Ser
CGA
-
¡û
>W09103034
AAIT01000001
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
310159
310070
-
Ser
CGA
[ENA]
¡û
>C191131969
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
2059004
2059093
+
Ser
CGA
-
¡û
>C191134413
CP035091
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
991986
991897
-
Ser
CGA
-
¡û
>C191159573
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
1668740
1668829
+
Ser
CGA
-
¡û
>W141558853
JHWH01000002
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
42660
42749
+
Ser
CGA
[ENA]
¡û
>C141006360
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
1003532
1003443
-
Ser
CGA
[Ensembl]
¡û
>W1911245322
NSJZ01000002
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
409816
409727
-
Ser
CGA
[ENA]
¡û
>W1911698513
QNRC01000029
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
41853
41764
-
Ser
CGA
[ENA]
¡û
>W1911813192
QZEV01000013
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
45238
45327
+
Ser
CGA
[ENA]
¡û
>W1911813262
QZEW01000111
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
12095
12184
+
Ser
CGA
[ENA]
¡û
>W1810235965
PPGA01000001
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
88832
88743
-
Ser
CGA
[ENA]
¡û
>W1810385248
PXNQ01000001
Alphaproteobacteria
Paracoccus methylarcula VKM B-2159 [PXNQ]
623889
623978
+
Ser
CGA
[ENA]
¡û
>W1810684506
QKYL01000198
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
9119
9030
-
Ser
CGA
[ENA]
¡û
>W1810697138
QLUV01000016
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
16650
16561
-
Ser
CGA
[ENA]
¡û
>W1810750735
QOZU01000025
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
947
858
-
Ser
CGA
[ENA]
¡û
>W1810759492
QPJL01000021
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
9839
9750
-
Ser
CGA
[ENA]
¡û
>W1810762336
QPML01000091
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
19813
19902
+
Ser
CGA
[ENA]
¡û
>W1810862237
QTUJ01000001
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
1508563
1508652
+
Ser
CGA
[ENA]
¡û
>W1810884860
QUMX01000017
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
83234
83145
-
Ser
CGA
[ENA]
¡û
>W1510013660
BBPH01000023
Alphaproteobacteria
Paracoccus sp. PAMC 22219 [BBPH]
29421
29332
-
Ser
CGA
[ENA]
¡û
>C11117028
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
400242
400331
+
Ser
CGA
[Ensembl]
¡û
>W1511348539
JRKN01000002
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
252841
252930
+
Ser
CGA
[ENA]
¡û
>W1511348602
JRKO01000013
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
19872
19961
+
Ser
CGA
[ENA]
¡û
>W1511348647
JRKP01000028
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
4911
5000
+
Ser
CGA
[ENA]
¡û
>W1511348690
JRKQ01000024
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
18592
18681
+
Ser
CGA
[ENA]
¡û
>W1511348750
JRKR01000100
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
10172
10261
+
Ser
CGA
[ENA]
¡û
>W1511348785
JRKS01000015
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
42815
42726
-
Ser
CGA
[ENA]
¡û
>W1511348839
JRKT01000052
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
4010
3921
-
Ser
CGA
[ENA]
¡û
>W1511518683
JXYF01000001
Alphaproteobacteria
Paracoccus sp. S4493 [JXYF]
24387
24476
+
Ser
CGA
[ENA]
¡û
>W1511526783
JYGY01000001
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
598785
598696
-
Ser
CGA
[ENA]
¡û
>W11143041
AEPN01000013
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
90064
90153
+
Ser
CGA
[ENA]
¡û
>W121060016
AJFB01001935
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
154
65
-
Ser
CGA
[ENA]
¡û
>W1610049826
BBFH01000120
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
4955
4866
-
Ser
CGA
[ENA]
¡û
>W1610716533
LLWQ01000154
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
3191
3102
-
Ser
CGA
[ENA]
¡û
>W1710046225
BBFH01000120
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
4955
4866
-
Ser
CGA
[ENA]
¡û
>W1710508099
FMVT01000006
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
868
779
-
Ser
CGA
[ENA]
¡û
>W1710513639
FNAH01000021
Alphaproteobacteria
Paracoccus isoporae [FNAH]
8340
8429
+
Ser
CGA
[ENA]
¡û
>W1710518461
FNEA01000006
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
12802
12713
-
Ser
CGA
[ENA]
¡û
>W1710521174
FNGE01000006
Alphaproteobacteria
Paracoccus chinensis [FNGE]
181591
181680
+
Ser
CGA
[ENA]
¡û
>W1710528223
FNNA01000003
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
328611
328700
+
Ser
CGA
[ENA]
¡û
>W1710547708
FODE01000041
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
3899
3810
-
Ser
CGA
[ENA]
¡û
>W1710553414
FOHO01000014
Alphaproteobacteria
Paracoccus homiensis [FOHO]
8858
8769
-
Ser
CGA
[ENA]
¡û
>W1710555536
FOJO01000001
Alphaproteobacteria
Paracoccus halophilus [FOJO]
176
87
-
Ser
CGA
[ENA]
¡û
>W1710563605
FOPU01000048
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
9674
9585
-
Ser
CGA
[ENA]
¡û
>W1710571585
FOWA01000054
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
7241
7152
-
Ser
CGA
[ENA]
¡û
>W1710574680
FOYK01000006
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
221142
221231
+
Ser
CGA
[ENA]
¡û
>W1710581772
FPKI01000020
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
22351
22440
+
Ser
CGA
[ENA]
¡û
>W1710592385
FRCK01000005
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
177
88
-
Ser
CGA
[ENA]
¡û
>W1710596206
FTMK01000026
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
26182
26271
+
Ser
CGA
[ENA]
¡û
>W1710599538
FTOU01000006
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
84174
84263
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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