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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294092 (38 seq.)
>W1711423262
MICP01000001
Mycoplasmatota
Tenericutes bacterium GWA2_35_7 [MICP]
6091
6167
+
Pro
TGG
[ENA]
¡û
>W1711423300
MICQ01000039
Mycoplasmatota
Tenericutes bacterium GWA2_38_26 [MICQ]
3003
2927
-
Pro
TGG
[ENA]
¡û
>W1711423324
MICR01000006
Mycoplasmatota
Tenericutes bacterium GWC2_34_14 [MICR]
111128
111052
-
Pro
TGG
[ENA]
¡û
>W1711423362
MICS01000024
Mycoplasmatota
Tenericutes bacterium GWC2_39_45 [MICS]
2999
2923
-
Pro
TGG
[ENA]
¡û
>W1711423370
MICT01000022
Mycoplasmatota
Tenericutes bacterium GWD2_38_27 [MICT]
8766
8842
+
Pro
TGG
[ENA]
¡û
>W1711423404
MICU01000003
Mycoplasmatota
Tenericutes bacterium GWE2_34_108 [MICU]
111140
111064
-
Pro
TGG
[ENA]
¡û
>W1711423436
MICV01000028
Mycoplasmatota
Tenericutes bacterium GWE2_38_8 [MICV]
21075
20999
-
Pro
TGG
[ENA]
¡û
>W1711423468
MICW01000013
Mycoplasmatota
Tenericutes bacterium GWF1_35_14 [MICW]
111130
111054
-
Pro
TGG
[ENA]
¡û
>W1711423496
MICX01000004
Mycoplasmatota
Tenericutes bacterium GWF2_35_184 [MICX]
111139
111063
-
Pro
TGG
[ENA]
¡û
>W1711423526
MICY01000027
Mycoplasmatota
Tenericutes bacterium GWF2_38_8 [MICY]
9117
9193
+
Pro
TGG
[ENA]
¡û
>W1711423566
MIDA01000022
Mycoplasmatota
Tenericutes bacterium RIFOXYA12_FULL_35_10 [MIDA]
15448
15372
-
Pro
TGG
[ENA]
¡û
>W1711423614
MIDB01000012
Mycoplasmatota
Tenericutes bacterium RIFOXYA2_FULL_36_32 [MIDB]
111145
111069
-
Pro
TGG
[ENA]
¡û
>W1711423663
MIDC01000022
Mycoplasmatota
Tenericutes bacterium RIFOXYB2_FULL_36_25 [MIDC]
111139
111063
-
Pro
TGG
[ENA]
¡û
>W1711423688
MIDD01000009
Mycoplasmatota
Tenericutes bacterium RIFOXYC2_FULL_35_27 [MIDD]
111133
111057
-
Pro
TGG
[ENA]
¡û
>W1711423708
MIDE01000004
Mycoplasmatota
Tenericutes bacterium RIFOXYD12_FULL_36_9 [MIDE]
110766
110690
-
Pro
TGG
[ENA]
¡û
>W1711423776
MIDF01000034
Mycoplasmatota
Tenericutes bacterium RIFOXYD2_FULL_35_11 [MIDF]
110855
110779
-
Pro
TGG
[ENA]
¡û
>W131221424
AUAL01000026
Mycoplasmatota
Haploplasma axanthum ATCC 25176 [AUAL]
3753
3829
+
Pro
TGG
[ENA]
¡û
>WENV180296601
OBJA01001125
[OBJA] soil metagenome; sediment, water from around vicinity
1
77
+
Pro
TGG
[ENA]
¢þ
>WENV180589433
OCOR01061560
[OCOR] marine metagenome; ENVO:00002042
286
362
+
Pro
TGG
[ENA]
¢þ
>WENV180593385
OCOX01032145
[OCOX] marine metagenome; ENVO:00002010
224
148
-
Pro
TGG
[ENA]
¢þ
>WENV181230513
OFEK01001260
[OFEK] activated sludge metagenome; Anaerobic digester
7657
7733
+
Pro
TGG
[ENA]
¢þ
>WENV018327
AACY020506153
Marine microbial communities from Global Ocean Sampling (GOS)
141
217
+
Pro
TGG
[ENA]
>WENV170005372
AMCI01003423
[AMCI] gut metagenome; fecal sample from gut
571
647
+
Pro
TGG
[ENA]
¢þ
>WENV170471589
CEVG01086187
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
397
321
-
Pro
TGG
[ENA]
¢þ
>WENV170475427
CEVH01351969
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
131
207
+
Pro
TGG
[ENA]
¢þ
>WENV170603920
FUWD010345688
[FUWD] metagenome; unknown
414
338
-
Pro
TGG
[ENA]
¢þ
>WENV170656974
JTFO01065612
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1230
1154
-
Pro
TGG
[ENA]
¢þ
>WENV170704493
LLEK01001377
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1550
1626
+
Pro
TGG
[ENA]
¢þ
>WENV170813233
MDSW01196318
[MDSW] marine metagenome; seawater
4900
4976
+
Pro
TGG
[ENA]
¢þ
>C181029214
CP017948
Mycoplasmatota
Tenericutes bacterium MO-XQ [CP017948]
1541294
1541218
-
Pro
TGG
-
¡û
>C181029241
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
1621230
1621154
-
Pro
TGG
-
¡û
>C191218805
LR215048
Mycoplasmatota
Haploplasma axanthum NCTC10138 [LR215048]
637855
637931
+
Pro
TGG
-
¡û
>W141560984
JHYB01000002
Mycoplasmatota
Haploplasma modicum ATCC 29102 [JHYB]
3182
3258
+
Pro
TGG
[ENA]
¡û
>C141012102
FO681347
Mycoplasmatota
Alteracholeplasma palmae J233 [FO681347]
305297
305373
+
Pro
TGG
[Ensembl]
¡û
>C141012160
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
1428429
1428353
-
Pro
TGG
[Ensembl]
¡û
>C141012171
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
626619
626543
-
Pro
TGG
[Ensembl]
¡û
>WENV045352
AACY022509527
Marine microbial communities from Global Ocean Sampling (GOS)
553
477
-
Pro
TGG
[ENA]
>WENV007374
AACY020193437
Marine microbial communities from Global Ocean Sampling (GOS)
273
197
-
Pro
TGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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