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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294180 (10 seq.)
>C171033721
CP014839
Betaproteobacteria
Pandoraea thiooxydans ATSB16 [CP014839]
1406
1482
+
Ile
GAT
-
¡û
>C171033745
CP014839
Betaproteobacteria
Pandoraea thiooxydans ATSB16 [CP014839]
4306462
4306538
+
Ile
GAT
-
¡û
>W131233970
AUKK01000091
Betaproteobacteria
Glomeribacter sp. 1016415 [AUKK]
19990
19914
-
Ile
GAT
[ENA]
¡û
>WENV170009752
APMI01002524
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
244
320
+
Ile
GAT
[ENA]
¢þ
>WENV170573213
FLYJ01005362
[FLYJ] hot springs metagenome; Sediment
1905
1981
+
Ile
GAT
[ENA]
¢þ
>C191001042
AP018150
Betaproteobacteria
Mycoavidus cysteinexigens B1-EB [AP018150]
115327
115403
+
Ile
GAT
-
¡û
>C191001049
AP018150
Betaproteobacteria
Mycoavidus cysteinexigens B1-EB [AP018150]
406174
406250
+
Ile
GAT
-
¡û
>C151084546
CP011568
Betaproteobacteria
Pandoraea thiooxydans DSM 25325 [CP011568]
3910921
3910997
+
Ile
GAT
-
¡û
>C151084553
CP011568
Betaproteobacteria
Pandoraea thiooxydans DSM 25325 [CP011568]
4070050
4070126
+
Ile
GAT
-
¡û
>W1510013104
BBOF01000087
Betaproteobacteria
bacterium endosymbiont of Mortierella elongata FMR23-6 [BBOF]
3643
3567
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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