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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294369 (41 seq.)
>W1710863836
LMFL01000005
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
73303
73227
-
Pro
CGG
[ENA]
¡û
>W1710863837
LMFL01000005
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
73193
73117
-
Pro
CGG
[ENA]
¡û
>W1710865540
LMGT01000004
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
293454
293530
+
Pro
CGG
[ENA]
¡û
>W1710873821
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
426806
426882
+
Pro
CGG
[ENA]
¡û
>W1710876090
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
862864
862788
-
Pro
CGG
[ENA]
¡û
>W1711408010
MGLN01000138
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
17269
17345
+
Pro
CGG
[ENA]
¡û
>W131052420
AMYY01000007
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
84119
84043
-
Pro
CGG
[ENA]
¡û
>WENV180038450
FZPW01000006
[FZPW] metagenome; underground water
41761
41837
+
Pro
CGG
[ENA]
¢þ
>WENV180259855
OBEQ011146223
[OBEQ] groundwater metagenome; groundwater
412
336
-
Pro
CGG
[ENA]
¢þ
>WENV180695057
OCZS012968692
[OCZS] soil metagenome; soil
161
85
-
Pro
CGG
[ENA]
¢þ
>WENV181192256
OEPS010514744
[OEPS] soil metagenome; soil
63
139
+
Pro
CGG
[ENA]
¢þ
>WENV181223150
OFDC01002453
[OFDC] hot springs metagenome; Water
8262
8186
-
Pro
CGG
[ENA]
¢þ
>WENV181227454
OFDN01010992
[OFDN] hot springs metagenome; Water
1058
1134
+
Pro
CGG
[ENA]
¢þ
>WENV181371078
OFQU01017546
[OFQU] wastewater metagenome; Exp Tend CN 90WW
497
573
+
Pro
CGG
[ENA]
¢þ
>WENV181384406
OFRI01000760
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1901
1825
-
Pro
CGG
[ENA]
¢þ
>W08010837
ABRU01000042
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
7704
7780
+
Pro
CGG
[ENA]
¡û
>WENV170011385
APMI01062374
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
450
374
-
Pro
CGG
[ENA]
¢þ
>WENV170192810
CEPG01014097
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1907
1983
+
Pro
CGG
[ENA]
¢þ
>WENV170200935
CEPP01016016
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
50630
50706
+
Pro
CGG
[ENA]
¢þ
>WENV170658931
JUGB01000514
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
2053
2129
+
Pro
CGG
[ENA]
¢þ
>WENV170711928
LNFM01008440
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5332
5256
-
Pro
CGG
[ENA]
¢þ
>WENV170829122
MDSZ01003262
[MDSZ] marine metagenome; seawater
69720
69796
+
Pro
CGG
[ENA]
¢þ
>C181056247
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
3250266
3250190
-
Pro
CGG
-
¡û
>C191166110
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
2019809
2019885
+
Pro
CGG
-
¡û
>C191189118
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
2087557
2087633
+
Pro
CGG
-
¡û
>W141712434
JMQR01000015
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
1967
1891
-
Pro
CGG
[ENA]
¡û
>W1911737849
QTTA01000010
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
225891
225815
-
Pro
CGG
[ENA]
¡û
>W1511489450
JWSY01000001
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
120579
120503
-
Pro
CGG
[ENA]
¡û
>W1511547878
JZRG01000012
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
119921
119845
-
Pro
CGG
[ENA]
¡û
>C161047065
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2170227
2170151
-
Pro
CGG
[Ensembl]
¡û
>C161089132
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1049198
1049122
-
Pro
CGG
[Ensembl]
¡û
>W1610074212
BCWM01000004
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
94164
94088
-
Pro
CGG
[ENA]
¡û
>W1610726182
LMFL01000005
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
73303
73227
-
Pro
CGG
[ENA]
¡û
>W1610726183
LMFL01000005
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
73193
73117
-
Pro
CGG
[ENA]
¡û
>W1610727886
LMGT01000004
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
293454
293530
+
Pro
CGG
[ENA]
¡û
>W1610736167
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
426806
426882
+
Pro
CGG
[ENA]
¡û
>W1610738436
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
862864
862788
-
Pro
CGG
[ENA]
¡û
>WENV081324
ABEF01042786
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
1638
1560
-
Pro
CGG
[ENA]
>W1710071330
BCWM01000004
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
94164
94088
-
Pro
CGG
[ENA]
¡û
>W1710084618
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
118201
118125
-
Pro
CGG
[ENA]
¡û
>W1710527037
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
465200
465124
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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