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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294405 (61 seq.)
>W1710791444
LJNT01000164
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA09 [LJNT]
24257
24332
+
Trp
CCA
[ENA]
¡û
>W1710797180
LJSV01000004
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
18547
18472
-
Trp
CCA
[ENA]
¡û
>W131215893
ATVJ01000002
Alphaproteobacteria
Ponticaulis koreensis DSM 19734 [ATVJ]
371631
371556
-
Trp
CCA
[ENA]
¡û
>W131221036
AUAC01000001
Alphaproteobacteria
Hellea balneolensis DSM 19091 [AUAC]
226
301
+
Trp
CCA
[ENA]
¡û
>W131230715
AUHV01000009
Alphaproteobacteria
Maritalea myrionectae DSM 19524 [AUHV]
5303
5378
+
Trp
CCA
[ENA]
¡û
>W1711388532
MEHS01000004
Alphaproteobacteria
Rhodobaca barguzinensis [MEHS]
1633013
1633088
+
Trp
CCA
[ENA]
¡û
>W1711388565
MEHT01000009
Alphaproteobacteria
Roseinatronobacter thiooxidans [MEHT]
2882
2957
+
Trp
CCA
[ENA]
¡û
>W1711642843
MPZQ01000004
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
166032
165957
-
Trp
CCA
[ENA]
¡û
>W1711642891
MPZR01000006
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
224044
224119
+
Trp
CCA
[ENA]
¡û
>W1711642964
MPZT01000002
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
751052
750977
-
Trp
CCA
[ENA]
¡û
>W1711643039
MPZU01000010
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
3831
3906
+
Trp
CCA
[ENA]
¡û
>W1711643061
MPZV01000002
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
799590
799515
-
Trp
CCA
[ENA]
¡û
>W1711643154
MPZX01000002
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
1227337
1227262
-
Trp
CCA
[ENA]
¡û
>WENV010859
AACY020294356
Marine microbial communities from Global Ocean Sampling (GOS)
931
854
-
Trp
CCA
[ENA]
>W1711947221
NBNX01000008
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
39820
39895
+
Trp
CCA
[ENA]
¡û
>W1711947246
NBNY01000002
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
39871
39946
+
Trp
CCA
[ENA]
¡û
>W1711947281
NBNZ01000002
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
39821
39896
+
Trp
CCA
[ENA]
¡û
>W1711959023
NBXF01000019
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
4139
4214
+
Trp
CCA
[ENA]
¡û
>C171094356
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
3745583
3745508
-
Trp
CCA
-
¡û
>W141065881
AQRC01000019
Alphaproteobacteria
Thioclava atlantica 13D2W-2 [AQRC]
2515
2590
+
Trp
CCA
[ENA]
¡û
>W141082508
AUNB01000038
Alphaproteobacteria
Thioclava indica DT23-4 [AUNB]
19775
19700
-
Trp
CCA
[ENA]
¡û
>WENV181233661
OFET01000030
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
18503
18428
-
Trp
CCA
[ENA]
¢þ
>WENV181233855
OFET01000155
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
25736
25811
+
Trp
CCA
[ENA]
¢þ
>WENV182543808
OJBD01000003
[OJBD] seawater metagenome; Sea water
155877
155802
-
Trp
CCA
[ENA]
¢þ
>WENV182546687
OJBP01001075
[OJBP] seawater metagenome; Sea water
1260
1335
+
Trp
CCA
[ENA]
¢þ
>WENV182560815
OJDV01000019
[OJDV] seawater metagenome; Sea water
4346
4271
-
Trp
CCA
[ENA]
¢þ
>WENV182578942
OJGP01027405
[OJGP] seawater metagenome; Sea water
324
249
-
Trp
CCA
[ENA]
¢þ
>W141279599
JAGK01000052
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
18996
18921
-
Trp
CCA
[ENA]
¡û
>WENV183065008
OLII01009495
[OLII] seawater metagenome; Sea water
1490
1565
+
Trp
CCA
[ENA]
¢þ
>WENV183630478
OOGS01022401
[OOGS] marine metagenome; seawater
271
196
-
Trp
CCA
[ENA]
¢þ
>WENV170200751
CEPO01015440
[CEPO] marine metagenome genome assembly TARA_041_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5242
5317
+
Trp
CCA
[ENA]
¢þ
>WENV170425272
CEUP01053347
[CEUP] marine metagenome genome assembly TARA_123_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
282
357
+
Trp
CCA
[ENA]
¢þ
>WENV170485073
CEVN01071817
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
711
786
+
Trp
CCA
[ENA]
¢þ
>WENV170646562
JQIA01000048
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
43847
43772
-
Trp
CCA
[ENA]
¢þ
>WENV170705001
LLEO01000575
[LLEO] bioreactor metagenome; day35 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2201
2276
+
Trp
CCA
[ENA]
¢þ
>WENV170705080
LLEP01000030
[LLEP] bioreactor metagenome; day64 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
4895
4970
+
Trp
CCA
[ENA]
¢þ
>WENV170705083
LLEP01000058
[LLEP] bioreactor metagenome; day64 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
3975
3900
-
Trp
CCA
[ENA]
¢þ
>WENV170705090
LLEP01000125
[LLEP] bioreactor metagenome; day64 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1614
1689
+
Trp
CCA
[ENA]
¢þ
>WENV170809318
MDSW01129861
[MDSW] marine metagenome; seawater
12254
12329
+
Trp
CCA
[ENA]
¢þ
>C181119656
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
415662
415737
+
Trp
CCA
-
¡û
>C191018798
CP021330
Alphaproteobacteria
Maritalea myrionectae HL2708#5 [CP021330]
1724848
1724923
+
Trp
CCA
-
¡û
>C191079668
CP031750
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
2333570
2333495
-
Trp
CCA
-
¡û
>W1911696523
QMEJ01000005
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
317901
317976
+
Trp
CCA
[ENA]
¡û
>W1911698493
QNRC01000005
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
211683
211608
-
Trp
CCA
[ENA]
¡û
>W1911783351
QXTF01000001
Alphaproteobacteria
Sphingomonas edaphi DAC4 [QXTF]
590715
590790
+
Trp
CCA
[ENA]
¡û
>W1911802710
QYUM01000004
Alphaproteobacteria
Sphingomonas cavernae K2R01-6 [QYUM]
379256
379331
+
Trp
CCA
[ENA]
¡û
>W1810385283
PXNQ01000018
Alphaproteobacteria
Paracoccus methylarcula VKM B-2159 [PXNQ]
3757
3832
+
Trp
CCA
[ENA]
¡û
>W1810722654
QNVJ01000074
Alphaproteobacteria
Alkalilacustris brevis 34079 [QNVJ]
32075
32150
+
Trp
CCA
[ENA]
¡û
>W1810750759
QOZU01000140
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
482
407
-
Trp
CCA
[ENA]
¡û
>W1810761164
QPLK01000021
Alphaproteobacteria
Rhodovulum sp. 12E13 [QPLK]
44160
44235
+
Trp
CCA
[ENA]
¡û
>W1810917849
QWDF01000001
Alphaproteobacteria
Sphingomonas mesophila SYSUP0001 [QWDF]
406320
406245
-
Trp
CCA
[ENA]
¡û
>C151079192
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
2003794
2003719
-
Trp
CCA
[Ensembl]
¡û
>W1610655369
LJNT01000164
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA09 [LJNT]
24257
24332
+
Trp
CCA
[ENA]
¡û
>W1610661137
LJSV01000004
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
18547
18472
-
Trp
CCA
[ENA]
¡û
>W1710513627
FNAH01000008
Alphaproteobacteria
Paracoccus isoporae [FNAH]
4474
4549
+
Trp
CCA
[ENA]
¡û
>W1710553405
FOHO01000007
Alphaproteobacteria
Paracoccus homiensis [FOHO]
60705
60780
+
Trp
CCA
[ENA]
¡û
>W1710570339
FOVB01000019
Alphaproteobacteria
Thioclava dalianensis [FOVB]
20525
20450
-
Trp
CCA
[ENA]
¡û
>W1710572919
FOXA01000047
Alphaproteobacteria
Tranquillimonas alkanivorans [FOXA]
17398
17323
-
Trp
CCA
[ENA]
¡û
>W1710582157
FPKU01000001
Alphaproteobacteria
Devosia enhydra [FPKU]
293519
293594
+
Trp
CCA
[ENA]
¡û
>W1710599475
FTOT01000001
Alphaproteobacteria
Gemmobacter megaterium [FTOT]
1502
1577
+
Trp
CCA
[ENA]
¡û
>W1710599543
FTOU01000009
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
73339
73264
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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