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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29450 (82 seq.)
>W1711687710
MSCT01000008
Gammaproteobacteria
Pseudomonas chlororaphis [MSCT]
330479
330568
+
Ser
GGA
[ENA]
¡û
>W1711783684
MVOL01000006
Gammaproteobacteria
Pseudomonas sp. MF4836 [MVOL]
270270
270359
+
Ser
GGA
[ENA]
¡û
>W1711942159
NBAT01000001
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis [NBAT]
540499
540410
-
Ser
GGA
[ENA]
¡û
>W141076008
ATBG01000009
Gammaproteobacteria
Pseudomonas chlororaphis HT66 [ATBG]
146781
146692
-
Ser
GGA
[ENA]
¡û
>W141079530
ATLP01000125
Gammaproteobacteria
Pseudomonas sp. CF161 [ATLP]
100230
100319
+
Ser
GGA
[ENA]
¡û
>W141146994
AWWJ01000020
Gammaproteobacteria
Pseudomonas chlororaphis YL-1 [AWWJ]
19603
19692
+
Ser
GGA
[ENA]
¡û
>W141195493
AYUD01000017
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca PB-St2 [AYUD]
619435
619524
+
Ser
GGA
[ENA]
¡û
>WENV170706223
LNAP01001740
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
41619
41530
-
Ser
GGA
[ENA]
¢þ
>C181000238
AP014623
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca StFRB508 [AP014623]
1837392
1837481
+
Ser
GGA
-
¡û
>C181115831
CP025309
Gammaproteobacteria
Pseudomonas chlororaphis Lzh-T5 [CP025309]
2030698
2030787
+
Ser
GGA
-
¡û
>C181158137
CP027656
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ZJU60 [CP027656]
1990719
1990808
+
Ser
GGA
-
¡û
>C191051922
CP027707
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium DSM 21509 [CP027707]
2033710
2033799
+
Ser
GGA
-
¡û
>C191051987
CP027708
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ATCC 17411 [CP027708]
2063255
2063344
+
Ser
GGA
-
¡û
>C191052052
CP027709
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ATCC 17809 [CP027709]
2063267
2063356
+
Ser
GGA
-
¡û
>C191052117
CP027710
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium SLPH10 [CP027710]
2020033
2020122
+
Ser
GGA
-
¡û
>C191052182
CP027711
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzTR44 [CP027711]
2047473
2047562
+
Ser
GGA
-
¡û
>C191052247
CP027712
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis DSM 50083 [CP027712]
2063063
2063152
+
Ser
GGA
-
¡û
>C191052312
CP027713
Gammaproteobacteria
Pseudomonas chlororaphis TAMOak81 [CP027713]
2024505
2024594
+
Ser
GGA
-
¡û
>C191052377
CP027714
Gammaproteobacteria
Pseudomonas chlororaphis ATCC 17415 [CP027714]
2005824
2005913
+
Ser
GGA
-
¡û
>C191052442
CP027715
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca M12 [CP027715]
2005040
2005129
+
Ser
GGA
-
¡û
>C191052507
CP027716
Gammaproteobacteria
Pseudomonas chlororaphis Pb-St2 [CP027716]
1952352
1952441
+
Ser
GGA
-
¡û
>C191052572
CP027717
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca PCM 2210 [CP027717]
2031664
2031753
+
Ser
GGA
-
¡û
>C191052637
CP027718
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca Q16 [CP027718]
2031185
2031274
+
Ser
GGA
-
¡û
>C191052702
CP027719
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens P2 [CP027719]
2053199
2053288
+
Ser
GGA
-
¡û
>C191052767
CP027720
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens DSM 6698 [CP027720]
2065898
2065987
+
Ser
GGA
-
¡û
>C191052832
CP027721
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR36 [CP027721]
2071172
2071261
+
Ser
GGA
-
¡û
>C191052897
CP027722
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens C50 [CP027722]
2019127
2019216
+
Ser
GGA
-
¡û
>C191053769
CP027735
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium DTR133 [CP027735]
2057034
2057123
+
Ser
GGA
-
¡û
>C191053834
CP027736
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium PCL1391 [CP027736]
2000253
2000342
+
Ser
GGA
-
¡û
>C191053899
CP027737
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium PCL1607 [CP027737]
2059278
2059367
+
Ser
GGA
-
¡û
>C191053964
CP027738
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzS135 [CP027738]
2023287
2023376
+
Ser
GGA
-
¡û
>C191054029
CP027739
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ToZa7 [CP027739]
2021410
2021499
+
Ser
GGA
-
¡û
>C191054094
CP027740
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzS140 [CP027740]
2013261
2013350
+
Ser
GGA
-
¡û
>C191054159
CP027741
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca 449 [CP027741]
2023967
2024056
+
Ser
GGA
-
¡û
>C191054224
CP027742
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca 464 [CP027742]
2025901
2025990
+
Ser
GGA
-
¡û
>C191054289
CP027743
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca CW2 [CP027743]
2019745
2019834
+
Ser
GGA
-
¡û
>C191054354
CP027744
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca M71 [CP027744]
2064428
2064517
+
Ser
GGA
-
¡û
>C191054419
CP027745
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca K27 [CP027745]
2051478
2051567
+
Ser
GGA
-
¡û
>C191054484
CP027746
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca DSM 19603 [CP027746]
2022452
2022541
+
Ser
GGA
-
¡û
>C191054549
CP027747
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens 66 [CP027747]
2051217
2051306
+
Ser
GGA
-
¡û
>C191054614
CP027748
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzS23 [CP027748]
2031760
2031849
+
Ser
GGA
-
¡û
>C191054679
CP027749
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR39 [CP027749]
2062629
2062718
+
Ser
GGA
-
¡û
>C191054744
CP027750
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzS24 [CP027750]
2053267
2053356
+
Ser
GGA
-
¡û
>C191054809
CP027751
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR18 [CP027751]
2042489
2042578
+
Ser
GGA
-
¡û
>C191054874
CP027752
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR38 [CP027752]
2063340
2063429
+
Ser
GGA
-
¡û
>C191054939
CP027753
Gammaproteobacteria
Pseudomonas chlororaphis B25 [CP027753]
2248593
2248682
+
Ser
GGA
-
¡û
>C191207273
LR134334
Gammaproteobacteria
Pseudomonas chlororaphis NCTC7357 [LR134334]
6245663
6245752
+
Ser
GGA
-
¡û
>W1910211320
FMCZ01000001
Gammaproteobacteria
Pseudomonas chlororaphis [FMCZ]
1247015
1246926
-
Ser
GGA
[ENA]
¡û
>W1910505561
FYEE01000015
Gammaproteobacteria
Pseudomonas sp. Irchel 3E20 [FYEE]
86037
86126
+
Ser
GGA
[ENA]
¡û
>W1910635865
LNTS01000002
Gammaproteobacteria
Pseudomonas chlororaphis L19 [LNTS]
521405
521494
+
Ser
GGA
[ENA]
¡û
>W1910766235
MOAN01000052
Gammaproteobacteria
Pseudomonas chlororaphis 14B11 [MOAN]
98773
98684
-
Ser
GGA
[ENA]
¡û
>W1910766309
MOAO01000006
Gammaproteobacteria
Pseudomonas chlororaphis 48B8 [MOAO]
1189994
1190083
+
Ser
GGA
[ENA]
¡û
>W1910768288
MOBW01000091
Gammaproteobacteria
Pseudomonas chlororaphis 48G9 [MOBW]
114267
114178
-
Ser
GGA
[ENA]
¡û
>W1911492460
OBDX01000002
Gammaproteobacteria
Pseudomonas sp. LAMO17WK12:I10 [OBDX]
59620
59531
-
Ser
GGA
[ENA]
¡û
>W1911680630
QJKE01000002
Gammaproteobacteria
Pseudomonas sp. LAMO17WK12:I9 [QJKE]
426042
426131
+
Ser
GGA
[ENA]
¡û
>W1810208667
POGE01000017
Gammaproteobacteria
Pseudomonas sp. FW306-2-2C-D06C [POGE]
9277
9188
-
Ser
GGA
[ENA]
¡û
>W1810208705
POGF01000002
Gammaproteobacteria
Pseudomonas sp. GW456-L14 [POGF]
3221
3132
-
Ser
GGA
[ENA]
¡û
>W1810208758
POGG01000001
Gammaproteobacteria
Pseudomonas sp. GW456-L12 [POGG]
169734
169823
+
Ser
GGA
[ENA]
¡û
>W1810208814
POGH01000001
Gammaproteobacteria
Pseudomonas sp. FW305-76 GW247-5R2A [POGH]
248500
248589
+
Ser
GGA
[ENA]
¡û
>W1810208869
POGI01000001
Gammaproteobacteria
Pseudomonas sp. FW126-L8 [POGI]
301756
301845
+
Ser
GGA
[ENA]
¡û
>W1810208921
POGJ01000001
Gammaproteobacteria
Pseudomonas sp. FW305-25 [POGJ]
86800
86889
+
Ser
GGA
[ENA]
¡û
>W1810239127
PPSD01000011
Gammaproteobacteria
Pseudomonas sp. GW531-T4 [PPSD]
59618
59707
+
Ser
GGA
[ENA]
¡û
>W1810624891
QHHP01000034
Gammaproteobacteria
Pseudomonas sp. RW409 [QHHP]
199344
199433
+
Ser
GGA
[ENA]
¡û
>W1810670581
QJRW01000001
Gammaproteobacteria
Pseudomonas chlororaphis LBs-160603 [QJRW]
495045
494956
-
Ser
GGA
[ENA]
¡û
>W1810692972
QLKZ01000001
Gammaproteobacteria
Pseudomonas chlororaphis HAMBI_1977 [QLKZ]
170909
170820
-
Ser
GGA
[ENA]
¡û
>C151035501
CP008696
Gammaproteobacteria
Pseudomonas chlororaphis PA23 [CP008696]
1954495
1954584
+
Ser
GGA
[Ensembl]
¡û
>C151048331
CP009290
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca JD37 [CP009290]
4611029
4610940
-
Ser
GGA
[Ensembl]
¡û
>C151073858
CP010892
Gammaproteobacteria
Pseudomonas sp. MRSN 12121 MRSN12121 [CP010892]
2030250
2030339
+
Ser
GGA
[Ensembl]
¡û
>C151077086
CP011110
Gammaproteobacteria
Pseudomonas chlororaphis PCL1606 [CP011110]
4606685
4606596
-
Ser
GGA
[Ensembl]
¡û
>W1510014585
BBQB01000029
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521 [BBQB]
55095
55006
-
Ser
GGA
[ENA]
¡û
>C161078807
CP014867
Gammaproteobacteria
Pseudomonas chlororaphis [CP014867]
826544
826455
-
Ser
GGA
-
¡û
>W121023656
AHAY01000301
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis GP72 [AHAY]
12127
12038
-
Ser
GGA
[ENA]
¡û
>W121032059
AHHJ01000004
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens 30-84 [AHHJ]
1185317
1185406
+
Ser
GGA
[ENA]
¡û
>W121038985
AHOT01000027
Gammaproteobacteria
Pseudomonas chlororaphis O6 [AHOT]
608929
609018
+
Ser
GGA
[ENA]
¡û
>W121086284
AKJU01000144
Gammaproteobacteria
Pseudomonas sp. GM17 [AKJU]
52245
52334
+
Ser
GGA
[ENA]
¡û
>W1610607722
LFUT01000004
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium [LFUT]
1178812
1178901
+
Ser
GGA
[ENA]
¡û
>W1710075655
BCZX01000003
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis NBRC 3904 [BCZX]
305046
305135
+
Ser
GGA
[ENA]
¡û
>W1710531864
FNPW01000007
Gammaproteobacteria
Pseudomonas sp. NFIX28 [FNPW]
307217
307128
-
Ser
GGA
[ENA]
¡û
>W1710543624
FOAE01000001
Gammaproteobacteria
Pseudomonas sp. NFACC41-3 [FOAE]
374520
374609
+
Ser
GGA
[ENA]
¡û
>W1710573192
FOXG01000003
Gammaproteobacteria
Pseudomonas sp. NFPP07 [FOXG]
361810
361899
+
Ser
GGA
[ENA]
¡û
>W1710609017
FXBP01000001
Gammaproteobacteria
Pseudomonas sp. NFIX51 [FXBP]
1169306
1169395
+
Ser
GGA
[ENA]
¡û
>W1710729009
LFUT01000004
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium [LFUT]
1178812
1178901
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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