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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.294510 (23 seq.)
>W1711798238
MWUJ01000045
Bacteroidota
Geofilum rhodophaeum HF401 [MWUJ]
1540
1464
-
Ile
GAT
[ENA]
¡û
>W141022711
AJUM01000039
Bacteroidota
Alkaliflexus imshenetskii DSM 15055 [AJUM]
345
419
+
Ile
GAT
[ENA]
¡û
>W141220950
AZYH01000014
Bacteroidota
Saccharicrinis fermentans DSM 9555 = JCM 21142 [AZYH]
2641326
2641400
+
Ile
GAT
[ENA]
¡û
>WENV183747584
PPCM01006667
[PPCM] marine sediment metagenome; marine sediment
456
382
-
Ile
GAT
[ENA]
¢þ
>WENV170016498
AZIK01010683
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
188
264
+
Ile
GAT
[ENA]
¢þ
>WENV170016500
AZIK01010783
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
193
269
+
Ile
GAT
[ENA]
¢þ
>WENV170111983
CEGC01000229
[CEGC] microbial mat metagenome; grass silage
1889
1965
+
Ile
GAT
[ENA]
¢þ
>WENV170112126
CEGD01001211
[CEGD] microbial mat metagenome; grass silage
197
121
-
Ile
GAT
[ENA]
¢þ
>WENV170694769
LGVE01006835
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1862
1936
+
Ile
GAT
[ENA]
¢þ
>WENV170697990
LGVF01234996
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
414
488
+
Ile
GAT
[ENA]
¢þ
>C181004347
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2393374
2393448
+
Ile
GAT
-
¡û
>C181004349
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2400372
2400446
+
Ile
GAT
-
¡û
>C181004355
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2653146
2653220
+
Ile
GAT
-
¡û
>C181004357
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2660143
2660217
+
Ile
GAT
-
¡û
>C181004363
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2822655
2822729
+
Ile
GAT
-
¡û
>C181004365
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
2999038
2999112
+
Ile
GAT
-
¡û
>W1910812461
MVDD01000036
Bacteroidota
Labilibaculum filiforme 59.16B [MVDD]
1835
1909
+
Ile
GAT
[ENA]
¡û
>W1910812528
MVDE01000070
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
1956
2030
+
Ile
GAT
[ENA]
¡û
>W1911718327
QQWG01000041
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
2019
2093
+
Ile
GAT
[ENA]
¡û
>W1911737981
QTZN01000028
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
3470
3396
-
Ile
GAT
[ENA]
¡û
>W1810587888
QFLI01000021
Bacteroidota
Marinifilum breve JC075 [QFLI]
2323
2397
+
Ile
GAT
[ENA]
¡û
>W1610043639
BAZX01000063
Bacteroidota
Marinifilum fragile JCM 15579 [BAZX]
1816
1892
+
Ile
GAT
[ENA]
¡û
>W1710040799
BAZX01000063
Bacteroidota
Marinifilum fragile JCM 15579 [BAZX]
1816
1892
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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